/// <inheritdoc />
public void AcceptVisitor(ISearchValueVisitor visitor)
{
EnsureArg.IsNotNull(visitor, nameof(visitor));
visitor.Visit(this);
}
public IFtpClientConnection Create(Uri uri, NetworkCredential credentials)
{
EnsureArg.IsNotNull(uri);
EnsureArg.IsNotNull(credentials);
return(new SystemNetFtpClientConnection(uri, credentials));
}
public PassportValidationController(IMapper mapper, PassportValidator validator)
{
this.mapper = EnsureArg.IsNotNull(mapper, nameof(mapper));
this.validator = EnsureArg.IsNotNull(validator, nameof(validator));
}
protected internal virtual async Task ExecuteResultAsync(HttpContext context, IActionResult result)
{
EnsureArg.IsNotNull(context, nameof(context));
EnsureArg.IsNotNull(result, nameof(result));
await result.ExecuteResultAsync(new ActionContext { HttpContext = context });
}
public override TOutput AcceptVisitor <TContext, TOutput>(IExpressionVisitor <TContext, TOutput> visitor, TContext context)
{
EnsureArg.IsNotNull(visitor, nameof(visitor));
return(visitor.VisitInclude(this, context));
}
/// <summary>
/// Adds an in-process identity provider if enabled in configuration.
/// </summary>
/// <param name="services">The services collection.</param>
/// <param name="configuration">The configuration root. The "DevelopmentIdentityProvider" section will be used to populate configuration values.</param>
/// <returns>The same services collection.</returns>
public static IServiceCollection AddDevelopmentIdentityProvider(this IServiceCollection services, IConfiguration configuration)
{
EnsureArg.IsNotNull(services, nameof(services));
EnsureArg.IsNotNull(configuration, nameof(configuration));
var authorizationConfiguration = new AuthorizationConfiguration();
configuration.GetSection("DicomServer:Security:Authorization").Bind(authorizationConfiguration);
var developmentIdentityProviderConfiguration = new DevelopmentIdentityProviderConfiguration();
configuration.GetSection("DevelopmentIdentityProvider").Bind(developmentIdentityProviderConfiguration);
services.AddSingleton(Options.Create(developmentIdentityProviderConfiguration));
if (developmentIdentityProviderConfiguration.Enabled)
{
services.AddIdentityServer()
.AddDeveloperSigningCredential()
.AddInMemoryApiScopes(new[] { new ApiScope(DevelopmentIdentityProviderConfiguration.Audience), new ApiScope(WrongAudienceClient), })
.AddInMemoryApiResources(new[]
{
new ApiResource(
DevelopmentIdentityProviderConfiguration.Audience,
userClaims: new[] { authorizationConfiguration.RolesClaim })
{
Scopes = { DevelopmentIdentityProviderConfiguration.Audience },
},
new ApiResource(
WrongAudienceClient,
userClaims: new[] { authorizationConfiguration.RolesClaim })
{
Scopes = { WrongAudienceClient },
},
})
.AddTestUsers(developmentIdentityProviderConfiguration.Users?.Select(user =>
new TestUser
{
Username = user.Id,
Password = user.Id,
IsActive = true,
SubjectId = user.Id,
Claims = user.Roles.Select(r => new Claim(authorizationConfiguration.RolesClaim, r)).ToList(),
}).ToList())
.AddInMemoryClients(
developmentIdentityProviderConfiguration.ClientApplications.Select(
applicationConfiguration =>
new Client
{
ClientId = applicationConfiguration.Id,
// client credentials and ROPC for testing
AllowedGrantTypes = GrantTypes.ResourceOwnerPasswordAndClientCredentials,
// secret for authentication
ClientSecrets = { new Secret(applicationConfiguration.Id.Sha256()) },
// scopes that client has access to
AllowedScopes = { DevelopmentIdentityProviderConfiguration.Audience, WrongAudienceClient },
// app roles that the client app may have
Claims = applicationConfiguration.Roles.Select(r => new ClientClaim(authorizationConfiguration.RolesClaim, r)).Concat(new[] { new ClientClaim("appid", applicationConfiguration.Id), }).ToList(),
ClientClaimsPrefix = string.Empty,
}));
}
return(services);
}
public TokenStringCompositeSearchParamsTableBulkCopyDataGenerator(ITableValuedParameterRowGenerator <IReadOnlyList <ResourceWrapper>, BulkTokenStringCompositeSearchParamTableTypeV1Row> searchParamGenerator)
{
EnsureArg.IsNotNull(searchParamGenerator, nameof(searchParamGenerator));
_searchParamGenerator = searchParamGenerator;
}
public HomeController(ILogger <HomeController> logger)
{
Logger = EnsureArg.IsNotNull(logger);
}
/// <summary>
/// Initializes a new instance of the <see cref="NaosReadOnlyRepositoryControllerBase{TEntity, TRepo}"/> class.
/// </summary>
/// <param name="repository">The repository.</param>
public NaosReadOnlyRepositoryControllerBase(TRepo repository)
{
EnsureArg.IsNotNull(repository, nameof(repository));
this.Repository = repository;
}
/// <summary>
/// Initializes a new instance of the <see cref="Manager"/> class.
/// </summary>
/// <param name="logger">The logger.</param>
protected Manager(ILogger logger)
{
EnsureArg.IsNotNull(logger, nameof(logger));
Logger = logger;
}
protected internal override void AcceptVisitor(IExpressionVisitor visitor)
{
EnsureArg.IsNotNull(visitor, nameof(visitor));
visitor.Visit(this);
}
public Uri ResolveResourceWrapperUrl(ResourceWrapper resource, bool includeVersion = false)
{
EnsureArg.IsNotNull(resource, nameof(resource));
return(ResolveResourceUrl(resource.ResourceId, resource.ResourceTypeName, resource.Version, includeVersion));
}
public Uri ResolveResourceUrl(IResourceElement resource, bool includeVersion = false)
{
EnsureArg.IsNotNull(resource, nameof(resource));
return(ResolveResourceUrl(resource.Id, resource.InstanceType, resource.VersionId, includeVersion));
}
public ValidateCapabilityPreProcessor(IConformanceProvider conformanceProvider)
{
EnsureArg.IsNotNull(conformanceProvider, nameof(conformanceProvider));
_conformanceProvider = conformanceProvider;
}
/// <inheritdoc />
public void Load(IServiceCollection services)
{
EnsureArg.IsNotNull(services, nameof(services));
var jsonParser = new FhirJsonParser(DefaultParserSettings.Settings);
var jsonSerializer = new FhirJsonSerializer();
var xmlParser = new FhirXmlParser();
var xmlSerializer = new FhirXmlSerializer();
services.AddSingleton(jsonParser);
services.AddSingleton(jsonSerializer);
services.AddSingleton(xmlParser);
services.AddSingleton(xmlSerializer);
services.AddSingleton <BundleSerializer>();
FhirPathCompiler.DefaultSymbolTable.AddFhirExtensions();
ResourceElement SetMetadata(Resource resource, string versionId, DateTimeOffset lastModified)
{
resource.VersionId = versionId;
resource.Meta.LastUpdated = lastModified;
return(resource.ToResourceElement());
}
services.AddSingleton <IReadOnlyDictionary <FhirResourceFormat, Func <string, string, DateTimeOffset, ResourceElement> > >(_ =>
{
return(new Dictionary <FhirResourceFormat, Func <string, string, DateTimeOffset, ResourceElement> >
{
{
FhirResourceFormat.Json, (str, version, lastModified) =>
{
var resource = jsonParser.Parse <Resource>(str);
return SetMetadata(resource, version, lastModified);
}
},
{
FhirResourceFormat.Xml, (str, version, lastModified) =>
{
var resource = xmlParser.Parse <Resource>(str);
return SetMetadata(resource, version, lastModified);
}
},
});
});
services.Add <ResourceDeserializer>()
.Singleton()
.AsSelf()
.AsService <IResourceDeserializer>();
services.Add <FormatterConfiguration>()
.Singleton()
.AsSelf()
.AsService <IPostConfigureOptions <MvcOptions> >();
services.AddSingleton <IFormatParametersValidator, FormatParametersValidator>();
services.AddSingleton <OperationOutcomeExceptionFilterAttribute>();
services.AddSingleton <ValidateFormatParametersAttribute>();
services.AddSingleton <ValidateExportRequestFilterAttribute>();
services.AddSingleton <ValidateReindexRequestFilterAttribute>();
// Support for resolve()
FhirPathCompiler.DefaultSymbolTable.AddFhirExtensions();
services.Add <FhirJsonInputFormatter>()
.Singleton()
.AsSelf()
.AsService <TextInputFormatter>();
services.Add <FhirJsonOutputFormatter>()
.Singleton()
.AsSelf()
.AsService <TextOutputFormatter>();
services.Add <FhirRequestContextAccessor>()
.Singleton()
.AsSelf()
.AsService <RequestContextAccessor <IFhirRequestContext> >();
services.AddSingleton <CorrelationIdProvider>(_ => () => Guid.NewGuid().ToString());
// Add conformance provider for implementation metadata.
services.Add <SystemConformanceProvider>()
.Singleton()
.AsSelf()
.AsImplementedInterfaces();
services.TypesInSameAssembly(KnownAssemblies.All)
.AssignableTo <IProvideCapability>()
.Transient()
.AsService <IProvideCapability>();
services.AddSingleton <IClaimsExtractor, PrincipalClaimsExtractor>();
ModelExtensions.SetModelInfoProvider();
services.Add(_ => ModelInfoProvider.Instance).Singleton().AsSelf().AsImplementedInterfaces();
// Register a factory to resolve a scope that returns all components that provide capabilities
services.AddFactory <IScoped <IEnumerable <IProvideCapability> > >();
// Register pipeline behavior to intercept create/update requests and check presence of provenace header.
services.Add <ProvenanceHeaderBehavior>().Scoped().AsSelf().AsImplementedInterfaces();
services.Add <ProvenanceHeaderState>().Scoped().AsSelf().AsImplementedInterfaces();
// Register pipeline behavior to check service permission for CUD actions on StructuredDefinition,ValueSet,CodeSystem, ConceptMap.
services.Add <ProfileResourcesBehaviour>().Singleton().AsSelf().AsImplementedInterfaces();
services.AddLazy();
services.AddScoped();
}
public NearestLocationsFinderServiceV2(ILocationsKdTree locationsKdTree)
{
EnsureArg.IsNotNull(locationsKdTree, nameof(locationsKdTree));
_locationsKdTree = locationsKdTree;
}
/// <summary>
/// Initializes a new instance of the <see cref="EntityUpdateDomainEventHandler"/> class.
/// </summary>
/// <param name="logger">The logger.</param>
public EntityUpdateDomainEventHandler(ILogger <EntityUpdateDomainEventHandler> logger)
{
EnsureArg.IsNotNull(logger, nameof(logger));
this.logger = logger;
}
public ITypedElement ToTypedElement(ISourceNode sourceNode)
{
EnsureArg.IsNotNull(sourceNode);
return(sourceNode.ToTypedElement(StructureDefinitionSummaryProvider));
}
public GetCapabilitiesResponse(CapabilityStatement capabilityStatement)
{
EnsureArg.IsNotNull(capabilityStatement, nameof(capabilityStatement));
CapabilityStatement = capabilityStatement;
}
public StoreResponseBuilder(IUrlResolver urlResolver)
{
EnsureArg.IsNotNull(urlResolver, nameof(urlResolver));
_urlResolver = urlResolver;
}
public GetExtendedQueryTagErrorsResponse(IReadOnlyCollection <ExtendedQueryTagError> extendedQueryTagErrors)
{
ExtendedQueryTagErrors = EnsureArg.IsNotNull(extendedQueryTagErrors);
}
public SearchParameterToSearchValueTypeMap(SupportedSearchParameterDefinitionManagerResolver searchParameterDefinitionManagerResolver)
{
EnsureArg.IsNotNull(searchParameterDefinitionManagerResolver, nameof(searchParameterDefinitionManagerResolver));
_searchParameterDefinitionManager = searchParameterDefinitionManagerResolver();
}
public NarrativeValidator(INarrativeHtmlSanitizer narrativeHtmlSanitizer)
{
EnsureArg.IsNotNull(narrativeHtmlSanitizer, nameof(narrativeHtmlSanitizer));
_narrativeHtmlSanitizer = narrativeHtmlSanitizer;
}
public SecurityModule(FhirServerConfiguration fhirServerConfiguration)
{
EnsureArg.IsNotNull(fhirServerConfiguration, nameof(fhirServerConfiguration));
_securityConfiguration = fhirServerConfiguration.Security;
}
public IFtpClientConnection Create(string host, NetworkCredential credentials)
{
EnsureArg.IsNotEmpty(host);
EnsureArg.IsNotNull(credentials);
return(new SystemNetFtpClientConnection(host, credentials));
}
/// <inheritdoc />
public async Task ExecuteAsync(ReindexJobRecord reindexJobRecord, WeakETag weakETag, CancellationToken cancellationToken)
{
EnsureArg.IsNotNull(reindexJobRecord, nameof(reindexJobRecord));
EnsureArg.IsNotNull(weakETag, nameof(weakETag));
if (_reindexJobRecord != null)
{
throw new NotSupportedException($"{nameof(ReindexJobTask)} can work only on one {nameof(reindexJobRecord)}. Please create new {nameof(ReindexJobTask)} to process this instance of {nameof(reindexJobRecord)}");
}
_reindexJobRecord = reindexJobRecord;
_weakETag = weakETag;
_jobSemaphore = new SemaphoreSlim(1, 1);
_cancellationToken = cancellationToken;
var originalRequestContext = _contextAccessor.RequestContext;
try
{
// Add a request context so Datastore consumption can be added
var fhirRequestContext = new FhirRequestContext(
method: OperationsConstants.Reindex,
uriString: "$reindex",
baseUriString: "$reindex",
correlationId: _reindexJobRecord.Id,
requestHeaders: new Dictionary <string, StringValues>(),
responseHeaders: new Dictionary <string, StringValues>())
{
IsBackgroundTask = true,
AuditEventType = OperationsConstants.Reindex,
};
_contextAccessor.RequestContext = fhirRequestContext;
if (reindexJobRecord.TargetDataStoreUsagePercentage != null &&
reindexJobRecord.TargetDataStoreUsagePercentage > 0)
{
using (IScoped <IFhirDataStore> store = _fhirDataStoreFactory.Invoke())
{
var provisionedCapacity = await store.Value.GetProvisionedDataStoreCapacityAsync(_cancellationToken);
_throttleController.Initialize(_reindexJobRecord, provisionedCapacity);
}
}
else
{
_throttleController.Initialize(_reindexJobRecord, null);
}
// If we are resuming a job, we can detect that by checking the progress info from the job record.
// If no queries have been added to the progress then this is a new job
if (_reindexJobRecord.QueryList?.Count == 0)
{
if (!await TryPopulateNewJobFields())
{
return;
}
}
if (_reindexJobRecord.Status != OperationStatus.Running || _reindexJobRecord.StartTime == null)
{
// update job record to running
_reindexJobRecord.Status = OperationStatus.Running;
_reindexJobRecord.StartTime = Clock.UtcNow;
await UpdateJobAsync();
}
await ProcessJob();
await _jobSemaphore.WaitAsync(_cancellationToken);
try
{
await CheckJobCompletionStatus();
}
finally
{
_jobSemaphore.Release();
}
}
catch (JobConflictException)
{
// The reindex job was updated externally.
_logger.LogInformation("The job was updated by another process.");
}
catch (OperationCanceledException)
{
_logger.LogInformation("The reindex job was canceled.");
}
catch (Exception ex)
{
await HandleException(ex);
}
finally
{
_jobSemaphore.Dispose();
_contextAccessor.RequestContext = originalRequestContext;
}
}
public TransactionBundleValidator(ResourceReferenceResolver referenceResolver)
{
EnsureArg.IsNotNull(referenceResolver, nameof(referenceResolver));
_referenceResolver = referenceResolver;
}
public FhirModule(FhirServerConfiguration fhirServerConfiguration)
{
EnsureArg.IsNotNull(fhirServerConfiguration, nameof(fhirServerConfiguration));
_featureConfiguration = fhirServerConfiguration.Features;
}
public ControlPlaneModule(FhirServerConfiguration fhirServerConfiguration)
{
EnsureArg.IsNotNull(fhirServerConfiguration, nameof(fhirServerConfiguration));
}
public DeleteHandler(IAuthorizationService <DataActions> authorizationService, IDeleteService deleteService)
: base(authorizationService)
{
_deleteService = EnsureArg.IsNotNull(deleteService, nameof(deleteService));
}