public Thryve(FileInfo ubiomeFile)
{
char[] sep = { ',' };
var lines = File.ReadAllLines(ubiomeFile.FullName);
_dataTable = DataInterfaces.GetTaxonDataTable();
for (var i = 1; i < lines.Length; i++)
{
if (string.IsNullOrWhiteSpace(lines[i]))
{
var parts = lines[i].Split(sep, StringSplitOptions.None);
int count = 0;
int.TryParse(parts[parts.Length - 1], out count);
var row = _dataTable.NewRow();
row["taxon"] = parts[0];
row["taxonBaseOneMillion"] = (double)count;
row["count"] = count;
_dataTable.Rows.Add(row);
}
}
SampleId = Guid.NewGuid().ToString();;
DateTime sampleDate = DateTime.UtcNow;
SampleDateTime = sampleDate;
}
public Ubiome(FileInfo ubiomeFile)
{
var filestream = new System.IO.FileStream(ubiomeFile.FullName,
System.IO.FileMode.Open,
System.IO.FileAccess.Read);
var file = new System.IO.StreamReader(filestream, System.Text.Encoding.UTF8, true, 128);
var json = JsonConvert.DeserializeObject <UbiomeHeaders>(file.ReadToEnd());
_dataTable = DataInterfaces.GetTaxonDataTable();
foreach (var count in json.UbiomeBacteriacounts)
{
var row = _dataTable.NewRow();
row["taxon"] = count.Taxon;
row["taxonBaseOneMillion"] = (double)count.CountNorm;
row["count"] = count.Count;
row["count_norm"] = count.CountNorm;
_dataTable.Rows.Add(row);
}
SampleId = json.SequencingRevision.ToString();
DateTime sampleDate = DateTime.UtcNow;
DateTime.TryParse(json.SamplingTime, out sampleDate);
SampleDateTime = sampleDate;
}