/// <summary>
/// Generate random values with a normal distribution
/// </summary>
public Population(Random rand, int pointCount, double mean = .5, double stdDev = .5)
{
values = DataGen.RandomNormal(rand, pointCount, mean, stdDev);
Recalculate();
}
public void MODCRStudyTeamOnlyCreationThroughCommitteeReviewToDeferred()
{
string targetStudy = "AutoTest-" + DataGen.String(5);
EntityClonerUtil.CloneEntity("STUDY00000024", targetStudy, true);
var CRSmartForm = new InitialModCrSmartForm();
var StudySF = new InitialStudySmartForm();
var workspace = new IRBWorkspace();
var irbSubmissionsPage = new IRBSubmissions();
var actionsNav = new ActionsNav();
// Log in as the PI and go to the IRB/Active tab and select an Approved study, Create Modification/CR ,
// select “Modification and Continuing” and “Other parts of the study”. Make changes to one or more views of the study.
Store.LoginAsUser(Users.Pi);
irbSubmissionsPage.OpenSubmissionByAllSubmissions(targetStudy);
actionsNav.ImgCreateModCr.Click();
// Fill in just required info
CRSmartForm.ChooseModCRPurpose(SubmissionPurpose.ModAndCR);
CRSmartForm.ChooseModificationScope(Scope.StudyTeamMemberInformation);
CRSmartForm.BtnContinue.Click();
CRSmartForm.SpecifyEnrollmentTotals("2", "2", "1");
CRSmartForm.ChooseResearchMilestone(InitialModCrSmartForm.MileStones.StudyPermanentlyClosedToEnrollment, InitialModCrSmartForm.MileStones.AllSubjectCompletedStudyRelatedInterventions,
InitialModCrSmartForm.MileStones.CollectionOfPrivateInfoComplete, InitialModCrSmartForm.MileStones.AnalysisOfPrivateInfoComplete);
CRSmartForm.RdoFinancialInterestNo.Click();
CRSmartForm.BtnContinue.Click();
// Modification Page
CRSmartForm.TxtSummarizeModifications.Value = "These are the new modifications! :/ :) :P";
CRSmartForm.BtnContinue.Click();
// Add a study team member, save, exit
//StudySF.StudyTeamMembersPage.AddStudyTeamMember("Czerch (comm2)", false, false, AddStudyTeamMemberPopup.Roles.CoInvestigator);
// test to see if "" selects first value...
StudySF.StudyTeamMembersPage.AddStudyTeamMember(false, false, "", AddStudyTeamMemberPopup.Roles.CoInvestigator);
StudySF.LnkSave.Click();
StudySF.LnkExit.Click();
//As the PI, Submit.
workspace.Submit(Users.Pi.UserName, Users.Pi.Password);
Assert.IsTrue(new Link(By.LinkText("Submitted")).Exists, "'Submitted' activity not found for: " + targetStudy);
Assert.IsTrue(workspace.GetStudyState() == "Pre-Review", "State expected not in 'Pre-Review'. State currently: " + workspace.GetStudyState());
var CRName = Web.PortalDriver.Title;
//Log in as the assigned coordinator and Submit Pre-Review
Store.LoginAsUser(Users.Irbc);
irbSubmissionsPage.OpenSubmissionByAllSubmissions(CRName);
workspace.SubmitPreReviewForCR();
Assert.IsTrue(workspace.GetStudyState() == "Pre-Review Completed", "State expected not in 'Pre-Review Completed'. State currently: " + workspace.GetStudyState());
// Log in as an IRB coordinator and Assign Coordinator
Store.LoginAsUser(Users.Irbc);
irbSubmissionsPage.OpenSubmissionByAllSubmissions(CRName);
workspace.AssignCoordinator("Orlando Max (irbc)");
//As the assigned coordinator, Assign Meeting.
workspace.AssignMeetingByFirstMeeting();
Assert.IsTrue(workspace.GetStudyState() == "Committee Review");
//As the assigned coordinator, Submit Committee Review (approved determination).
// need determination, risk level
workspace.SubmitCommitteeReview(SubmitCommitteeReviewPopup.Determinations.Deferred, "2", "0", "0", "0", "0", "", true);
Assert.IsTrue(workspace.GetStudyState() == "Post-Review", "State expected not in 'Post-Review'. State currently: " + workspace.GetStudyState());
// As the assigned IRB Coordinator, Finalize Documents.
workspace.FinalizeDocuments();
Assert.IsTrue(workspace.GetStudyState() == "Post-Review", "State expected not in 'Post-Review'. State currently: " + workspace.GetStudyState());
//As the assigned coordinator, Prepare Letter.
workspace.PrepareLetter();
Assert.IsTrue(workspace.GetStudyState() == "Post-Review", "State expected not in 'Post-Review'. State currently: " + workspace.GetStudyState());
// As the assigned coordinator, Send Letter.
workspace.SendLetter();
Assert.IsTrue(workspace.GetStudyState() == "Deferred", "State expected not in 'Deferred'. State currently: " + workspace.GetStudyState());
}
public void ExecuteRecipe(Plot plt)
{
double[,] imageData = DataGen.SampleImageData();
plt.AddHeatmap(imageData);
}
public MultiAxisLock()
{
InitializeComponent();
Random rand = new Random();
double[] data1 = DataGen.RandomWalk(rand, 100, mult: 1);
double[] data2 = DataGen.RandomWalk(rand, 100, mult: 10);
double[] data3 = DataGen.RandomWalk(rand, 100, mult: 100);
double avg1 = data1.Sum() / data1.Length;
double avg2 = data2.Sum() / data2.Length;
double avg3 = data3.Sum() / data3.Length;
// Add signals specifying the vertical axis index for each
var plt1 = formsPlot1.Plot.AddSignal(data1);
plt1.YAxisIndex = 0;
plt1.LineWidth = 3;
plt1.Color = Color.Magenta;
var plt2 = formsPlot1.Plot.AddSignal(data2);
plt2.YAxisIndex = 1;
plt2.LineWidth = 3;
plt2.Color = Color.Green;
var plt3 = formsPlot1.Plot.AddSignal(data3);
plt3.YAxisIndex = 2;
plt3.LineWidth = 3;
plt3.Color = Color.Navy;
// Add draggable horizontal lines specifying the vertical axis index for each
var hline1 = formsPlot1.Plot.AddHorizontalLine(avg1);
hline1.DragEnabled = true;
hline1.Color = plt1.Color;
hline1.LineStyle = LineStyle.Dash;
hline1.YAxisIndex = 0;
var hline2 = formsPlot1.Plot.AddHorizontalLine(avg2);
hline2.DragEnabled = true;
hline2.Color = plt2.Color;
hline2.LineStyle = LineStyle.Dash;
hline2.YAxisIndex = 1;
var hline3 = formsPlot1.Plot.AddHorizontalLine(avg3);
hline3.DragEnabled = true;
hline3.Color = plt3.Color;
hline3.LineStyle = LineStyle.Dash;
hline3.YAxisIndex = 2;
// The horizontal axis is shared by these signal plots (XAxisIndex defaults to 0)
formsPlot1.Plot.XAxis.Label("Horizontal Axis");
// Customize the primary (left) and secondary (right) axes
formsPlot1.Plot.YAxis.Color(Color.Magenta);
formsPlot1.Plot.YAxis.Label("Primary Axis");
formsPlot1.Plot.YAxis2.Color(Color.Green);
formsPlot1.Plot.YAxis2.Label("Secondary Axis");
// the secondary (right) axis ticks are hidden by default so enable them
formsPlot1.Plot.YAxis2.Ticks(true);
// Create an additional vertical axis and customize it
YAxis3 = formsPlot1.Plot.AddAxis(Renderable.Edge.Left, 2);
YAxis3.Color(Color.Navy);
YAxis3.Label("Tertiary Axis");
// adjust axis limits to fit the data once before locking them based on initial check state
formsPlot1.Plot.AxisAuto();
SetLocks();
formsPlot1.Refresh();
}
public void Render(Plot plt)
{
// create some sample data to represent test scores.
Random rand = new Random(0);
// Each class (A, B, C) is a series.
// Each semester (fall, spring, summer A, summer B) is a group.
double[] scoresAfall = DataGen.RandomNormal(rand, 35, 85, 5);
double[] scoresBfall = DataGen.RandomNormal(rand, 42, 87, 5);
double[] scoresCfall = DataGen.RandomNormal(rand, 23, 82, 5);
double[] scoresAspring = DataGen.RandomNormal(rand, 35, 84, 3);
double[] scoresBspring = DataGen.RandomNormal(rand, 42, 88, 3);
double[] scoresCspring = DataGen.RandomNormal(rand, 23, 84, 3);
double[] scoresAsumA = DataGen.RandomNormal(rand, 35, 80, 5);
double[] scoresBsumA = DataGen.RandomNormal(rand, 42, 90, 5);
double[] scoresCsumA = DataGen.RandomNormal(rand, 23, 85, 5);
double[] scoresAsumB = DataGen.RandomNormal(rand, 35, 91, 2);
double[] scoresBsumB = DataGen.RandomNormal(rand, 42, 93, 2);
double[] scoresCsumB = DataGen.RandomNormal(rand, 23, 90, 2);
// Collect multiple populations into a PopulationSeries.
// All populations in a series will be styled the same and appear once in the legend.
var popsA = new Statistics.Population[] {
new Statistics.Population(scoresAfall),
new Statistics.Population(scoresAspring),
new Statistics.Population(scoresAsumA),
new Statistics.Population(scoresAsumB)
};
var popsB = new Statistics.Population[] {
new Statistics.Population(scoresBfall),
new Statistics.Population(scoresBspring),
new Statistics.Population(scoresBsumA),
new Statistics.Population(scoresBsumB)
};
var popsC = new Statistics.Population[] {
new Statistics.Population(scoresCfall),
new Statistics.Population(scoresCspring),
new Statistics.Population(scoresCsumA),
new Statistics.Population(scoresCsumB)
};
var seriesA = new Statistics.PopulationSeries(popsA, "Class A");
var seriesB = new Statistics.PopulationSeries(popsB, "Class B");
var seriesC = new Statistics.PopulationSeries(popsC, "Class C");
var allSeries = new Statistics.PopulationSeries[] { seriesA, seriesB, seriesC };
// create a MultiSeries from multiple population series and plot it
var multiSeries = new Statistics.PopulationMultiSeries(allSeries);
plt.PlotPopulations(multiSeries);
// improve the style of the plot
plt.Title($"Test Scores by Class");
plt.YLabel("Score");
plt.XTicks(new string[] { "Fall", "Spring", "Summer A", "Summer B" });
plt.Legend();
plt.Grid(lineStyle: LineStyle.Dot, enableVertical: false);
}
public void ExecuteRecipe(Plot plt)
{
// OHLCs are open, high, low, and closing prices for a time range.
OHLC[] prices = DataGen.RandomStockPrices(null, 60);
plt.AddCandlesticks(prices);
}
public Form1()
{
InitializeComponent();
// Prepare separate Y axes
formsPlot1.Plot.YAxis.Color(Color.Magenta);
var yAxis1 = formsPlot1.Plot.YAxis;
var yAxis2 = formsPlot1.Plot.AddAxis(ScottPlot.Renderable.Edge.Left, 2, "", Color.Navy);
var yAxis3 = formsPlot1.Plot.AddAxis(ScottPlot.Renderable.Edge.Left, 3, "", Color.Green);
// Create data and add it to the plot
Random rand = new(0);
double[] data1 = DataGen.RandomWalk(rand, 100, mult: 1);
double[] data2 = DataGen.RandomWalk(rand, 100, mult: 10);
double[] data3 = DataGen.RandomWalk(rand, 100, mult: 100);
double avg1 = data1.Sum() / data1.Length;
double avg2 = data2.Sum() / data2.Length;
double avg3 = data3.Sum() / data3.Length;
var plt1 = formsPlot1.Plot.AddSignal(data1);
plt1.YAxisIndex = 0;
plt1.LineWidth = 3;
plt1.Color = Color.Magenta;
var plt2 = formsPlot1.Plot.AddSignal(data2);
plt2.YAxisIndex = 3;
plt2.LineWidth = 3;
plt2.Color = Color.Green;
var plt3 = formsPlot1.Plot.AddSignal(data3);
plt3.YAxisIndex = 2;
plt3.LineWidth = 3;
plt3.Color = Color.Navy;
// Add draggable horizontal lines specifying the vertical axis index for each
var hline1 = formsPlot1.Plot.AddHorizontalLine(avg1);
hline1.DragEnabled = true;
hline1.Color = plt1.Color;
hline1.LineStyle = LineStyle.Dash;
hline1.YAxisIndex = 0;
hline1.PositionLabelBackground = plt1.Color;
hline1.PositionFormatter = (double position) => position.ToString("N0");
hline1.PositionLabel = true;
hline1.PositionLabelAxis = yAxis1;
var hline2 = formsPlot1.Plot.AddHorizontalLine(avg3);
hline2.DragEnabled = true;
hline2.Color = plt3.Color;
hline2.LineStyle = LineStyle.Dash;
hline2.YAxisIndex = 2;
hline2.PositionLabelBackground = plt3.Color;
hline2.PositionFormatter = (double position) => position.ToString("N0");
hline2.PositionLabel = true;
hline2.PositionLabelAxis = yAxis2;
var hline3 = formsPlot1.Plot.AddHorizontalLine(avg2);
hline3.DragEnabled = true;
hline3.Color = plt2.Color;
hline3.LineStyle = LineStyle.Dash;
hline3.YAxisIndex = 3;
hline3.PositionLabelBackground = plt2.Color;
hline3.PositionFormatter = (double position) => position.ToString("N0");
hline3.PositionLabel = true;
hline3.PositionLabelAxis = yAxis3;
// update the plot
formsPlot1.Plot.AxisAuto();
formsPlot1.Refresh();
}
public LinkedPlots()
{
InitializeComponent();
formsPlot1.Plot.AddSignal(DataGen.Sin(51));
formsPlot2.Plot.AddSignal(DataGen.Cos(51));
}
private void FormSandbox_Load(object sender, EventArgs e)
{
formsPlot1.plt.PlotSignal(DataGen.Sin(51));
formsPlot1.plt.PlotSignal(DataGen.Cos(51));
formsPlot1.Render();
}
public void Render(Plot plt)
{
plt.PlotSignal(DataGen.Sin(51));
plt.Ticks(xTickRotation: -45); // TODO: rotations other than 0-90 look bad!
}
public Person_Tests()
{
this.local = DataGen.Person().ToArray();
}
public VisualizerViewModel(NaiveBaysModel baysModel)
{
_baysModel = baysModel;
_plot.plt.PlotSignal(DataGen.RandomWalk(new Random(), 1000));
_plot.Render();
}
public void MODCRStudyTeamOnlyCreationThroughNonCommitteeReviewWithModificationsRequiredToApproved()
{
string targetStudy = "AutoTest-" + DataGen.String(5);
EntityClonerUtil.CloneEntity("STUDY00000024", targetStudy, true);
var CRSmartForm = new InitialModCrSmartForm();
var StudySF = new InitialStudySmartForm();
var workspace = new IRBWorkspace();
var irbSubmissionsPage = new IRBSubmissions();
var actionsNav = new ActionsNav();
// Log in as the PI and go to the IRB/Active tab and select an Approved study, Create Modification/CR ,
// select “Modification and Continuing” and “Other parts of the study”. Make changes to one or more views of the study.
Store.LoginAsUser(Users.Pi);
irbSubmissionsPage.OpenSubmissionByAllSubmissions(targetStudy);
actionsNav.ImgCreateModCr.Click();
// Fill in just required info
CRSmartForm.ChooseModCRPurpose(SubmissionPurpose.ModAndCR);
CRSmartForm.ChooseModificationScope(Scope.StudyTeamMemberInformation);
CRSmartForm.BtnContinue.Click();
CRSmartForm.SpecifyEnrollmentTotals("2", "2", "1");
CRSmartForm.ChooseResearchMilestone(InitialModCrSmartForm.MileStones.StudyPermanentlyClosedToEnrollment, InitialModCrSmartForm.MileStones.AllSubjectCompletedStudyRelatedInterventions,
InitialModCrSmartForm.MileStones.CollectionOfPrivateInfoComplete, InitialModCrSmartForm.MileStones.AnalysisOfPrivateInfoComplete);
CRSmartForm.RdoFinancialInterestNo.Click();
CRSmartForm.BtnContinue.Click();
// Modification Page
CRSmartForm.TxtSummarizeModifications.Value = "These are the new modifications! :/ :) :P";
CRSmartForm.BtnContinue.Click();
// Add a study team member, save, exit
StudySF.StudyTeamMembersPage.AddStudyTeamMember(false, false, "", AddStudyTeamMemberPopup.Roles.CoInvestigator);
StudySF.LnkSave.Click();
StudySF.LnkExit.Click();
//As the PI, Submit the Mod.
workspace.Submit(Users.Pi.UserName, Users.Pi.Password);
Assert.IsTrue(new Link(By.LinkText("Submitted")).Exists, "'Submitted' activity not found for: " + targetStudy);
Assert.IsTrue(workspace.GetStudyState() == "Pre-Review", "State expected not in 'Pre-Review'. State currently: " + workspace.GetStudyState());
var CRName = Web.PortalDriver.Title;
//Log in as the assigned coordinator and Submit Pre-Review
Store.LoginAsUser(Users.Irbc);
irbSubmissionsPage.OpenSubmissionByAllSubmissions(CRName);
workspace.SubmitPreReviewForCR();
// As the assigned IRBC, Assign Designated Reviewer.
Store.LoginAsUser(Users.Irbc);
irbSubmissionsPage.OpenSubmissionByAllSubmissions(CRName);
workspace.AssignDesignatedReviewer("Harry Smith (comm4)");
Assert.IsTrue(workspace.GetStudyState() == "Non-Committee Review", "State expected not in 'Non-Committee Review'. State currently: " + workspace.GetStudyState());
// Log in as the Designated Reviewer and Submit Designated Review approved.
Store.LoginAsUser(Users.Comm4);
irbSubmissionsPage.OpenSubmissionByAllSubmissions(CRName);
workspace.SubmitDesignatedReviewForStudy(SubmitDesignatedReview.StudyDeterminations.ModificationsRequiredToSecureApproved, "These are modifications required: :/", true);
Assert.IsTrue(workspace.GetStudyState() == "Post-Review", "State expected not in 'Post-Review'. State currently: " + workspace.GetStudyState());
// As the assigned IRB Coordinator, Finalize Documents.
Store.LoginAsUser(Users.Irbc);
irbSubmissionsPage.OpenSubmissionByAllSubmissions(CRName);
workspace.FinalizeDocuments();
Assert.IsTrue(workspace.GetStudyState() == "Post-Review", "State expected not in 'Post-Review'. State currently: " + workspace.GetStudyState());
//As the assigned coordinator, Prepare Letter.
workspace.PrepareLetter();
Assert.IsTrue(workspace.GetStudyState() == "Post-Review", "State expected not in 'Post-Review'. State currently: " + workspace.GetStudyState());
// As the assigned coordinator, Send Letter.
workspace.SendLetter();
Assert.IsTrue(workspace.GetStudyState() == "Modifications Required", "State expected not in 'Modifications Required'. State currently: " + workspace.GetStudyState());
// Log in as the PI and Submit Response.
Store.LoginAsUser(Users.Pi);
irbSubmissionsPage.OpenSubmissionByAllSubmissions(CRName);
workspace.SubmitResponse(Users.Pi.UserName, Users.Pi.Password, "This is my response! :P");
Assert.IsTrue(workspace.GetStudyState() == "Modifications Submitted", "State expected not in 'Modifications Submitted'. State currently: " + workspace.GetStudyState());
// Log in as the assigned IRB Coordinator, Review Required Modifications (Yes to the question “Were the modifications completed as required?” “yes” response)
Store.LoginAsUser(Users.Irbc);
irbSubmissionsPage.OpenSubmissionByAllSubmissions(CRName);
workspace.ReviewRequiredModifications();
Assert.IsTrue(workspace.GetStudyState() == "Post-Review", "State expected not in 'Post-Review'. State currently: " + workspace.GetStudyState());
//As the assigned coordinator, Prepare Letter.
workspace.PrepareLetter();
Assert.IsTrue(workspace.GetStudyState() == "Post-Review", "State expected not in 'Post-Review'. State currently: " + workspace.GetStudyState());
// As the assigned coordinator, Send Letter.
workspace.SendLetter();
Assert.IsTrue(workspace.GetStudyState() == "Approved", "State expected not in 'Approved'. State currently: " + workspace.GetStudyState());
}
public void ExecuteRecipe(Plot plt)
{
// Each class (A, B, C) is a series.
// Each semester (fall, spring, summer A, summer B) is a group.
// create sample data to represent test scores for each class in each semester
Random rand = new Random(0);
double[] scoresAfall = DataGen.RandomNormal(rand, 35, 85, 5);
double[] scoresBfall = DataGen.RandomNormal(rand, 42, 87, 5);
double[] scoresCfall = DataGen.RandomNormal(rand, 23, 82, 5);
double[] scoresAspring = DataGen.RandomNormal(rand, 35, 84, 3);
double[] scoresBspring = DataGen.RandomNormal(rand, 42, 88, 3);
double[] scoresCspring = DataGen.RandomNormal(rand, 23, 84, 3);
double[] scoresAsumA = DataGen.RandomNormal(rand, 35, 80, 5);
double[] scoresBsumA = DataGen.RandomNormal(rand, 42, 90, 5);
double[] scoresCsumA = DataGen.RandomNormal(rand, 23, 85, 5);
double[] scoresAsumB = DataGen.RandomNormal(rand, 35, 91, 2);
double[] scoresBsumB = DataGen.RandomNormal(rand, 42, 93, 2);
double[] scoresCsumB = DataGen.RandomNormal(rand, 23, 90, 2);
// Collect multiple populations into a PopulationSeries.
// All populations in a series will be styled the same and appear once in the legend.
var popsA = new Statistics.Population[] {
new Statistics.Population(scoresAfall),
new Statistics.Population(scoresAspring),
new Statistics.Population(scoresAsumA),
new Statistics.Population(scoresAsumB)
};
var popsB = new Statistics.Population[] {
new Statistics.Population(scoresBfall),
new Statistics.Population(scoresBspring),
new Statistics.Population(scoresBsumA),
new Statistics.Population(scoresBsumB)
};
var popsC = new Statistics.Population[] {
new Statistics.Population(scoresCfall),
new Statistics.Population(scoresCspring),
new Statistics.Population(scoresCsumA),
new Statistics.Population(scoresCsumB)
};
// create a population series for each array of populations and give it a label
var seriesA = new Statistics.PopulationSeries(popsA, "Class A");
var seriesB = new Statistics.PopulationSeries(popsB, "Class B");
var seriesC = new Statistics.PopulationSeries(popsC, "Class C");
var allSeries = new Statistics.PopulationSeries[] { seriesA, seriesB, seriesC };
// create a MultiSeries from multiple population series and plot it
var multiSeries = new Statistics.PopulationMultiSeries(allSeries);
plt.AddPopulations(multiSeries);
// improve the style of the plot
string[] groupNames = new string[] { "Fall", "Spring", "Summer A", "Summer B" };
plt.XTicks(groupNames);
plt.XAxis.Grid(false);
plt.Legend();
}
public MouseTracker()
{
InitializeComponent();
formsPlot1.Plot.AddSignal(DataGen.RandomWalk(null, 100));
Crosshair = formsPlot1.Plot.AddCrosshair(0, 0);
}
private void AddSine(object sender, EventArgs e)
{
formsPlot1.plt.PlotSignal(DataGen.Sin(51, phase: rand.NextDouble() * 1000));
formsPlot1.plt.AxisAuto();
formsPlot1.Render();
}
public void ContinuingReviewThroughNonCommitteeReviewThroughModsRequiredToApproved()
{
string targetStudy = "AutoTest-" + DataGen.String(5);
EntityClonerUtil.CloneEntity("STUDY00000024", targetStudy, true);
var CRSmartForm = new InitialModCrSmartForm();
var workspace = new IRBWorkspace();
var irbSubmissionsPage = new IRBSubmissions();
var actionsNav = new ActionsNav();
//Log in as the PI to an Approved study and select Create Modification/CR. Select “Continuing Review” and on the Continuing Review/Study Closure Information select the top 4 Research milestones.
Store.LoginAsUser(Users.Pi);
irbSubmissionsPage.OpenSubmissionByAllSubmissions(targetStudy);
actionsNav.ImgCreateModCr.Click();
// Fill in just required info
CRSmartForm.ChooseModCRPurpose(SubmissionPurpose.ContinuingReview);
CRSmartForm.BtnContinue.Click();
CRSmartForm.SpecifyEnrollmentTotals("2", "2", "1");
CRSmartForm.ChooseResearchMilestone(InitialModCrSmartForm.MileStones.StudyPermanentlyClosedToEnrollment, InitialModCrSmartForm.MileStones.AllSubjectCompletedStudyRelatedInterventions,
InitialModCrSmartForm.MileStones.CollectionOfPrivateInfoComplete, InitialModCrSmartForm.MileStones.AnalysisOfPrivateInfoComplete);
CRSmartForm.RdoFinancialInterestNo.Click();
CRSmartForm.BtnContinue.Click();
CRSmartForm.BtnFinish.Click();
//As the PI, Submit the Continuing Review.
workspace.Submit(Users.Pi.UserName, Users.Pi.Password);
Assert.IsTrue(new Link(By.LinkText("Submitted")).Exists, "'Submitted' activity not found for: " + targetStudy);
Assert.IsTrue(workspace.GetStudyState() == "Pre-Review", "State expected not in 'Pre-Review'. State currently: " + workspace.GetStudyState());
var CRName = Web.PortalDriver.Title;
// Log in as an IRB coordinator and Assign Coordinator
Store.LoginAsUser(Users.Irbc);
irbSubmissionsPage.OpenSubmissionByAllSubmissions(CRName);
workspace.AssignCoordinator("Orlando Max (irbc)");
//Log in as the assigned coordinator and Submit Pre-Review
workspace.SubmitPreReviewForCR();
Assert.IsTrue(workspace.GetStudyState() == "Pre-Review Completed", "State expected not in 'Pre-Review Completed'. State currently: " + workspace.GetStudyState());
// As the assigned IRBC, Assign Designated Reviewer.
workspace.AssignDesignatedReviewer("Harry Smith (comm4)");
Assert.IsTrue(workspace.GetStudyState() == "Non-Committee Review", "State expected not in 'Non-Committee Review'. State currently: " + workspace.GetStudyState());
// Log in as the Designated Reviewer and Submit Designated Review (human research not engaged determination).
Store.LoginAsUser(Users.Comm4);
irbSubmissionsPage.OpenSubmissionByAllSubmissions(CRName);
workspace.SubmitDesignatedReviewForStudy(SubmitDesignatedReview.StudyDeterminations.ModificationsRequiredToSecureApproved, "These are comments for the modification! :/ ", true);
Assert.IsTrue(workspace.GetStudyState() == "Post-Review", "State expected not in 'Post-Review'. State currently: " + workspace.GetStudyState());
// As the assigned IRB Coordinator, Finalize Documents.
Store.LoginAsUser(Users.Irbc);
irbSubmissionsPage.OpenSubmissionByAllSubmissions(CRName);
workspace.FinalizeDocuments();
Assert.IsTrue(workspace.GetStudyState() == "Post-Review", "State expected not in 'Post-Review'. State currently: " + workspace.GetStudyState());
//As the assigned coordinator, Prepare Letter.
workspace.PrepareLetter();
Assert.IsTrue(workspace.GetStudyState() == "Post-Review", "State expected not in 'Post-Review'. State currently: " + workspace.GetStudyState());
// As the assigned coordinator, Send Letter.
workspace.SendLetter();
Assert.IsTrue(workspace.GetStudyState() == "Modifications Required", "State expected not in 'Modifications Required'. State currently: " + workspace.GetStudyState());
// Log in as the PI and Submit Response.
Store.LoginAsUser(Users.Pi);
irbSubmissionsPage.OpenSubmissionByAllSubmissions(CRName);
workspace.SubmitResponse(Users.Pi.UserName, Users.Pi.Password, "This is my response! :P");
Assert.IsTrue(workspace.GetStudyState() == "Modifications Submitted", "State expected not in 'Modifications Submitted'. State currently: " + workspace.GetStudyState());
// Log in as the assigned IRB Coordinator, Review Required Modifications (Yes to the question “Were the modifications completed as required?” “yes” response)
Store.LoginAsUser(Users.Irbc);
irbSubmissionsPage.OpenSubmissionByAllSubmissions(CRName);
workspace.ReviewRequiredModifications();
Assert.IsTrue(workspace.GetStudyState() == "Post-Review", "State expected not in 'Post-Review'. State currently: " + workspace.GetStudyState());
//As the assigned coordinator, Prepare Letter.
workspace.PrepareLetter();
Assert.IsTrue(workspace.GetStudyState() == "Post-Review", "State expected not in 'Post-Review'. State currently: " + workspace.GetStudyState());
// As the assigned coordinator, Send Letter.
workspace.SendLetter();
Assert.IsTrue(workspace.GetStudyState() == "Approved", "State expected not in 'Approved'. State currently: " + workspace.GetStudyState());
}
public Channel(int code)
{
Code = code;
Random = new Random();
Data = DataGen.RandomWalk(Random, 500);
}
public void ContinuingReviewThroughCommitteeReviewToDeferred()
{
string targetStudy = "AutoTest-" + DataGen.String(5);
EntityClonerUtil.CloneEntity("STUDY00000024", targetStudy, true);
var CRSmartForm = new InitialModCrSmartForm();
var workspace = new IRBWorkspace();
var irbSubmissionsPage = new IRBSubmissions();
var actionsNav = new ActionsNav();
//Log in as the PI to an Approved study and select Create Modification/CR. Select “Continuing Review” and on the Continuing Review/Study Closure Information select the top 4 Research milestones.
Store.LoginAsUser(Users.Pi);
irbSubmissionsPage.OpenSubmissionByAllSubmissions(targetStudy);
actionsNav.ImgCreateModCr.Click();
// Fill in just required info
CRSmartForm.ChooseModCRPurpose(SubmissionPurpose.ContinuingReview);
CRSmartForm.BtnContinue.Click();
CRSmartForm.SpecifyEnrollmentTotals("2", "2", "1");
CRSmartForm.ChooseResearchMilestone(InitialModCrSmartForm.MileStones.StudyPermanentlyClosedToEnrollment, InitialModCrSmartForm.MileStones.AllSubjectCompletedStudyRelatedInterventions,
InitialModCrSmartForm.MileStones.CollectionOfPrivateInfoComplete, InitialModCrSmartForm.MileStones.AnalysisOfPrivateInfoComplete);
CRSmartForm.RdoFinancialInterestNo.Click();
CRSmartForm.BtnContinue.Click();
CRSmartForm.BtnFinish.Click();
//As the PI, Submit the Continuing Review.
workspace.Submit(Users.Pi.UserName, Users.Pi.Password);
Assert.IsTrue(new Link(By.LinkText("Submitted")).Exists, "'Submitted' activity not found for: " + targetStudy);
Assert.IsTrue(workspace.GetStudyState() == "Pre-Review", "State expected not in 'Pre-Review'. State currently: " + workspace.GetStudyState());
var CRName = Web.PortalDriver.Title;
//Log in as the assigned coordinator and Submit Pre-Review
Store.LoginAsUser(Users.Irbc);
irbSubmissionsPage.OpenSubmissionByAllSubmissions(CRName);
workspace.SubmitPreReviewForCR();
// Log in as an IRB coordinator and Assign Coordinator
Store.LoginAsUser(Users.Irbc);
irbSubmissionsPage.OpenSubmissionByAllSubmissions(CRName);
workspace.AssignCoordinator("Orlando Max (irbc)");
//As the assigned coordinator, Assign Meeting.
workspace.AssignMeetingByFirstMeeting();
Assert.IsTrue(workspace.GetStudyState() == "Committee Review");
//As the assigned coordinator, Submit Committee Review (approved determination).
// need determination, risk level
workspace.SubmitCommitteeReview(SubmitCommitteeReviewPopup.Determinations.Deferred, "2", "0", "0", "0", "0", "", true);
Assert.IsTrue(workspace.GetStudyState() == "Post-Review", "State expected not in 'Post-Review'. State currently: " + workspace.GetStudyState());
// As the assigned IRB Coordinator, Finalize Documents.
workspace.FinalizeDocuments();
Assert.IsTrue(workspace.GetStudyState() == "Post-Review", "State expected not in 'Post-Review'. State currently: " + workspace.GetStudyState());
//As the assigned coordinator, Prepare Letter.
workspace.PrepareLetter();
Assert.IsTrue(workspace.GetStudyState() == "Post-Review", "State expected not in 'Post-Review'. State currently: " + workspace.GetStudyState());
// As the assigned coordinator, Send Letter.
workspace.SendLetter();
Assert.IsTrue(workspace.GetStudyState() == "Deferred", "State expected not in 'Deferred'. State currently: " + workspace.GetStudyState());
}
public void Render(Plot plt)
{
double[,] imageData = DataGen.SampleImageData();
plt.PlotHeatmap(imageData);
}
public MainWindow()
{
const string versionText = "Blinklicht Fibonacci";
const string versionNummer = "V2.0";
const int anzByteDigInput = 1;
const int anzByteDigOutput = 1;
const int anzByteAnalogInput = 0;
const int anzByteAnalogOutput = 0;
VersionInfoLokal = versionText + " " + versionNummer;
Datenstruktur = new Datenstruktur(anzByteDigInput, anzByteDigOutput, anzByteAnalogInput, anzByteAnalogOutput);
ConfigPlc = new ConfigPlc.Plc("./ConfigPlc");
BeschriftungenPlc = new BeschriftungenPlc();
var viewModel = new ViewModel.ViewModel(this);
InitializeComponent();
DataContext = viewModel;
DatenRangieren = new DatenRangieren(viewModel);
PlcDaemon = new PlcDaemon(Datenstruktur, DatenRangieren.Rangieren);
DatenRangieren.ReferenzUebergeben(PlcDaemon.Plc);
DisplayPlc = new DisplayPlc.DisplayPlc(Datenstruktur, ConfigPlc, BeschriftungenPlc);
TestAutomat = new TestAutomat.TestAutomat(Datenstruktur, DisplayPlc.EventBeschriftungAktualisieren, BeschriftungenPlc, PlcDaemon.Plc);
TestAutomat.SetTestConfig("./ConfigTests/");
TestAutomat.TabItemFuellen(TabItemAutomatischerSoftwareTest, DisplayPlc);
Closing += (_, e) =>
{
e.Cancel = true;
Schliessen();
};
var zeitachse = DataGen.Consecutive(5000);
WpfPlot.Plot.XAxis.Label("Zeit [ms]");
WpfPlot.Plot.YLabel("Leuchtmelder");
WpfPlot.Plot.AddScatter(zeitachse, WertLeuchtMelder, Color.Magenta, 1, 1, MarkerShape.none, LineStyle.Solid, "LED");
// create a timer to modify the data
var updateDataTimer = new DispatcherTimer {
Interval = TimeSpan.FromMilliseconds(10)
};
updateDataTimer.Tick += UpdateData;
updateDataTimer.Start();
// create a timer to update the GUI
var renderTimer = new DispatcherTimer {
Interval = TimeSpan.FromMilliseconds(10)
};
renderTimer.Tick += Render;
renderTimer.Start();
Datenstruktur.BetriebsartProjekt = BetriebsartProjekt.Simulation;
}
public void ExecuteRecipe(Plot plt)
{
OHLC[] prices = DataGen.RandomStockPrices(null, 60);
plt.AddOHLCs(prices);
}
public void AddRelatedGrant()
{
string targetStudy = "AutoTest-" + DataGen.String(5);
CloneEntity("STUDY00000017", targetStudy);
var ActionsNav = new ActivitiesNav();
var AddRelatedGrantPopup = new AddRelatedGrant("STUDY-" + targetStudy, "Add Related Grant");
var ClickIRBGrantInfoPopup = new AddClickIRBGrantInfo();
var Inbox = new Inbox();
//var SelectPersonsPage = new ChooserPopup("Persons", true);
Store.LoginAsUser(Users.Irbd);
ActionsNav.LnkSubmissions.Click();
Inbox.LnkAdvanced.Click();
Wait.Until(h => Inbox.QueryField1.Displayed);
Inbox.QueryField1.SelectByInnerText("Name");
Wait.Until(h => Inbox.QueryCriteria1.Enabled);
Inbox.QueryCriteria1.Text = targetStudy;
Wait.Until(d => Inbox.BtnGo.Enabled);
Inbox.BtnGo.Click();
Wait.Until(d => Inbox.BtnGo.Enabled);
var studyForReview = new CCElement(By.LinkText(targetStudy));
studyForReview.Click();
ActionsNav.LnkAddRelatedGrant.Click();
AddRelatedGrantPopup.SwitchTo();
AddRelatedGrantPopup.BtnAdd.Click();
ClickIRBGrantInfoPopup.SwitchTo();
ClickIRBGrantInfoPopup.TxtGrantId.Value = "Grant-" + DataGen.String(4);
ClickIRBGrantInfoPopup.TxtGrantTitle.Value = "Grant Title Automation Test" + DataGen.String(4);
ClickIRBGrantInfoPopup.BtnOk.Click();
ClickIRBGrantInfoPopup.SwitchBackToParent();
AddRelatedGrantPopup.BtnOk.Click();
AddRelatedGrantPopup.SwitchBackToParent();
Wait.Until(h => new CCElement(By.LinkText("Related Grants Updated")).Exists);
Assert.IsTrue(new CCElement(By.LinkText("Related Grants Updated")).Exists, "'Related Grants Updated' activity not found for: " + targetStudy);
}
public static void PlotHeatmapImage(Plot plt, Colormap cmap)
{
double[,] intensities = DataGen.SampleImageData();
plt.Clear();
plt.PlotHeatmap(intensities, cmap);
}
public void test()
{
string targetStudy = "AutoTest-" + DataGen.String(5);
EntityClonerUtil.CloneEntity("STUDY00000024", targetStudy, true);
}
public DataFactory()
{
ohlcs = DataGen.RandomStockPrices(rand, 20000, sequential: true);
}
public void ExecuteRecipe(Plot plt)
{
(double[] xs, double[] ys) = DataGen.RandomWalk2D(new Random(0), 5_000);
plt.AddSignalXY(xs, ys);
}
public void Render(Plot plt)
{
Random rand = new Random(0);
plt.PlotErrorBars(
xs: DataGen.Random(rand, 10, 10),
ys: DataGen.Random(rand, 10, 10),
xPositiveError: DataGen.Random(rand, 10),
xNegativeError: DataGen.Random(rand, 10),
yPositiveError: DataGen.Random(rand, 10),
yNegativeError: DataGen.Random(rand, 10),
label: "error bars"
);
var func = new Func <double, double?>((x) => Math.Sin(x) * Math.Sin(10 * x) + 3);
plt.PlotFunction(func, label: "function", lineWidth: 2);
var func2 = new Func <double, double?>((x) => Math.Sin(x) * Math.Sin(10 * x) + 5);
plt.PlotFunction(func2, label: null); // null labels will not appear in legend
plt.PlotHLine(7.75, label: "horizontal line", lineStyle: LineStyle.Dot);
plt.PlotVLine(7.75, label: "vertical line", lineStyle: LineStyle.Dash);
plt.PlotHSpan(1.5, 2.5, label: "horizontal span");
plt.PlotVSpan(1.5, 2.5, label: "vertical span");
plt.PlotOHLC(new OHLC[] {
new OHLC(5, 6, 4, 5.5, 1),
new OHLC(6, 7.5, 3.5, 4.75, 1.5),
new OHLC(5.5, 6, 3, 4.5, 2)
});
plt.PlotCandlestick(new OHLC[] {
new OHLC(5, 6, 4, 5.5, 3),
new OHLC(6, 7.5, 3.5, 4.75, 3.5),
new OHLC(5.5, 6, 3, 4.5, 4)
});
plt.PlotScatter(
xs: new double[] { 5, 5.5, 6, 7, 7, 6 },
ys: new double[] { 7, 8, 7, 9, 7, 8 },
lineStyle: LineStyle.Dash,
lineWidth: 2,
markerShape: MarkerShape.openCircle,
markerSize: 10,
label: "Scatter Plot"
);
plt.PlotSignal(
ys: DataGen.RandomNormal(rand, 10),
sampleRate: 5,
xOffset: 3,
yOffset: 8,
label: "Signal Plot"
);
plt.PlotText("ScottPlot", 6, 6, rotation: 25, fontSize: 14, bold: true);
plt.PlotPoint(1, 9, label: "point");
plt.PlotArrow(8, 8, 8.5, 8.5, label: "arrow");
plt.SetAxisLimits(0, 13, -1, 11);
plt.Legend();
plt.Grid(false);
}
//private static ScottPlot.Plot plt = new ScottPlot.Plot(600,400);
public static double[] loads(ExcelBuilding building, string month, float dischargeThreshold = 40000f)
{
//ScottPlot.Plot plt = new Plot();
double[] loadValues = null;
double[] xs;
switch (month)
{
case "January":
loadValues = building.JanuaryLoads.ToArray();
xs = DataGen.Range(loadValues.Count());
//plt.PlotScatter(xs, loadValues);
break;
case "February":
loadValues = building.FebruaryLoads.ToArray();
xs = DataGen.Range(loadValues.Count());
//plt.PlotScatter(xs, loadValues);
break;
case "March":
loadValues = building.MarchLoads.ToArray();
xs = DataGen.Range(loadValues.Count());
//plt.PlotScatter(xs, loadValues);
break;
case "April":
loadValues = building.AprilLoads.ToArray();
xs = DataGen.Range(loadValues.Count());
//plt.PlotScatter(xs, loadValues);
break;
case "May":
loadValues = building.MayLoads.ToArray();
xs = DataGen.Range(loadValues.Count());
//plt.PlotScatter(xs, loadValues);
break;
case "June":
loadValues = building.JuneLoads.ToArray();
xs = DataGen.Range(loadValues.Count());
//plt.PlotScatter(xs, loadValues);
break;
case "July":
loadValues = building.JulyLoads.ToArray();
xs = DataGen.Range(loadValues.Count());
//plt.PlotScatter(xs, loadValues);
break;
case "August":
loadValues = building.AugustLoads.ToArray();
xs = DataGen.Range(loadValues.Count());
//plt.PlotScatter(xs, loadValues);
break;
case "September":
loadValues = building.SeptemberLoads.ToArray();
xs = DataGen.Range(loadValues.Count());
//plt.PlotScatter(xs, loadValues);
break;
case "October":
loadValues = building.OctoberLoads.ToArray();
xs = DataGen.Range(loadValues.Count());
//plt.PlotScatter(xs, loadValues);
break;
case "November":
loadValues = building.NovemberLoads.ToArray();
xs = DataGen.Range(loadValues.Count());
//plt.PlotScatter(xs, loadValues);
break;
case "December":
loadValues = building.DecemberLoads.ToArray();
xs = DataGen.Range(loadValues.Count());
//plt.PlotScatter(xs, loadValues);
break;
}
return(loadValues);
}
