public override string GetValue(string fieldName)
{
switch (fieldName)
{
case Fields.Accession:
return(Accession);
case Fields.Description:
return(Description);
case Fields.Database:
return(Database);
case Fields.DatabaseVersion:
return(DatabaseVersion);
case Fields.SearchEngine:
return(SearchEngines == null ? MzTab.NullFieldText : string.Join("|", SearchEngines));
case Fields.TaxID:
return(TaxID.ToString());
case Fields.Species:
return(Species);
case Fields.Modifications:
return(Modificiations);
case Fields.AmbiguityMembers:
return(AmbiguityMembers == null ? MzTab.NullFieldText : string.Join(",", AmbiguityMembers));
case Fields.Reliability:
if (Reliability == MzTab.ReliabilityScore.NotSet)
{
return(MzTab.NullFieldText);
}
return(((int)Reliability).ToString());
case Fields.Coverage:
return(Coverage.ToString());
case Fields.Uri:
return(Uri != null?Uri.ToString() : MzTab.NullFieldText);
case Fields.GoTerms:
return(GoTerms == null ? MzTab.NullFieldText : string.Join("|", GoTerms));
}
if (fieldName.Contains("["))
{
string condensedFieldName;
List <int> indices = MzTab.GetFieldIndicies(fieldName, out condensedFieldName);
switch (condensedFieldName)
{
case Fields.SearchEngine:
return(GetListValue(_searchEngines, indices[0]));
case Fields.BestSearchEngineScore:
return(GetListValue(_bestSearchEngineScores, indices[0]));
case Fields.AbundancePerAssay:
return(GetListValue(_abundanceAssays, indices[0]));
case Fields.AbundanceStudyVariables:
return(GetListValue(_abundanceStudyVariables, indices[0]));
case Fields.AbundanceStdevStudyVariables:
return(GetListValue(_abundanceStdevStudyVariables, indices[0]));
case Fields.AbundanceStandardErrorStudyVariables:
return(GetListValue(_abundanceStandardErrorStudyVariables, indices[0]));
case Fields.SearchEngineScoreMsRun:
return(GetListValue(_searchEngineScoreMsRun, indices[0], indices[1]));
case Fields.NumberOfPsmsPerMsRun:
return(GetListValue(_numberOfPsmsPerMsRun, indices[0]));
case Fields.NumberOfDistinctPeptidesPerMsRun:
return(GetListValue(_numberOfDistinctPeptidesPerMsRun, indices[0]));
case Fields.NumberOfUniquePeptidesPerMsRun:
return(GetListValue(_numberOfUniquePeptidesPerMsRun, indices[0]));
}
}
if (fieldName.StartsWith(MzTab.OptionalColumnPrefix))
{
return(GetOptionalData(fieldName));
}
throw new ArgumentException("Unexpected field name: " + fieldName);
}
