private IndividualValuesCache withUpdatedGenderAndRace(IndividualValuesCache individualValuesCache)
{
var parameterValues = individualValuesCache.ParameterValuesCache;
var covariateValuesCache = new CovariateValuesCache();
individualValuesCache.CovariateValuesCache.AllCovariateValues.Each(x =>
{
if (!x.CovariateName.IsOneOf(Constants.Population.RACE_INDEX, Constants.Population.GENDER))
{
covariateValuesCache.Add(x);
}
else if (string.Equals(x.CovariateName, Constants.Population.RACE_INDEX))
{
covariateValuesCache.Add(populationCovariateFrom(x));
}
else
{
covariateValuesCache.Add(genderCovariateFrom(x));
}
});
return(new IndividualValuesCache(parameterValues, covariateValuesCache, individualValuesCache.IndividualIds));
}
protected override void Context()
{
base.Context();
_originalValueCache = new ParameterValuesCache();
//3 individuals to in original pop
_originalIndividualIds = new List <int> {
1, 2, 3
};
var parameterValues1 = new ParameterValues("Path1");
parameterValues1.Add(new double[] { 2, 3, 4 });
var parameterValues2 = new ParameterValues("Path2");
parameterValues2.Add(new double[] { 4, 5, 6 });
_originalValueCache.Add(parameterValues1);
_originalValueCache.Add(parameterValues2);
_originalCovariates = new CovariateValuesCache();
_originalCovariates.Add("Gender", new[] { "Male", "Female", "Female" });
_parameterCache = new PathCacheForSpecs <IParameter>();
_cacheToMerge = new ParameterValuesCache();
var parameterValuesToMerge1 = new ParameterValues("Path1");
parameterValuesToMerge1.Add(new double[] { 10, 20 });
_cacheToMerge.Add(parameterValuesToMerge1);
var parameterValuesToMerge2 = new ParameterValues("Path3");
parameterValuesToMerge2.Add(new double[] { 30, 40 });
_cacheToMerge.Add(parameterValuesToMerge2);
_covariatesToMerge = new CovariateValuesCache();
_covariatesToMerge.Add("Gender", new[] { "Female", "Female" });
_covariatesToMerge.Add("Population", new[] { "European", "American" });
_individualIdsToMerge = new List <int> {
10, 20
};
sut = new IndividualValuesCache(_originalValueCache, _originalCovariates, _originalIndividualIds);
_individualPropertiesCacheToMerge = new IndividualValuesCache(_cacheToMerge, _covariatesToMerge, _individualIdsToMerge);
}
protected override void Context()
{
base.Context();
sut.Add("Gender", new List <string> {
"Male", "Female"
});
sut.Add("Race", new List <string> {
"Japanese", "European"
});
_cacheToMerge = new CovariateValuesCache();
_cacheToMerge.Add("Gender", new List <string> {
"Female", "Female"
});
_cacheToMerge.Add("Head", new List <string> {
"Big", "Small"
});
}
private XElement createCovariateValuesCacheElement(IEnumerable <XElement> allCovariatesElement)
{
var covariateValuesCache = new CovariateValuesCache();
var individualCovariatesReader = _container.Resolve <IXmlReader <IndividualCovariates> >();
var covariateValuesCacheWriter = _container.Resolve <IXmlWriter <CovariateValuesCache> >();
var context = SerializationTransaction.Create(_container);
// List of old covariates as defined in PKSim 8.x and below
var allIndividualCovariates = new List <IndividualCovariates>();
foreach (var individualCovariatesElement in allCovariatesElement.Descendants("IndividualCovariates"))
{
var individualCovariates = individualCovariatesReader.ReadFrom(individualCovariatesElement, context);
allIndividualCovariates.Add(individualCovariates);
}
var allCovariateNames = allIndividualCovariates.FirstOrDefault()?.Attributes.Keys.ToList() ?? new List <string>();
allCovariateNames.Add(Constants.Population.GENDER);
allCovariateNames.Add(Constants.Population.POPULATION);
// Transform the old covariates in the new structure
foreach (var covariateName in allCovariateNames)
{
var covariateValues = new CovariateValues(covariateName);
if (string.Equals(covariateName, Constants.Population.GENDER))
{
covariateValues.Values = allIndividualCovariates.Select(x => x.Gender.Name).ToList();
}
else if (string.Equals(covariateName, Constants.Population.POPULATION))
{
covariateValues.Values = allIndividualCovariates.Select(x => x.Race.Name).ToList();
}
else
{
covariateValues.Values = allIndividualCovariates.Select(x => x.Covariate(covariateName)).ToList();
}
covariateValuesCache.Add(covariateValues);
}
return(covariateValuesCacheWriter.WriteFor(covariateValuesCache, context));
}