public TestBed(string protocolFilePath, [NotNull] IReportScriptOut reportScriptOut)
{
Out = reportScriptOut ?? throw new ArgumentNullException(nameof(reportScriptOut));
protocolFilePath = CheckFileExistsInCurrentFolderOrScriptsFolder(protocolFilePath);
var protocol = (IAssayPackageProtocol)AssayPackageManager.AssayPackageManager.UnPack(protocolFilePath);
if (string.IsNullOrEmpty(protocol.AssayRunDetailsFilePath) || !File.Exists(protocol.AssayRunDetailsFilePath))
{
throw new Exception($"The protocol {Path.GetFullPath(protocolFilePath)} is not ready for analysis. Open it in MyAssays Analysis and save, then try again.");
}
var pluginsInputStorage = new PluginsInputStorage();
pluginsInputStorage.StoreAssayXml(protocol.AssayXml.OuterXml);
pluginsInputStorage.LoadRunDetails(protocol.AssayRunDetailsFilePath);
pluginsInputStorage.InitialiseTransformInputs();
var analysisLoggerMock = new Mock <IAnalysisLogger>();
_data = AnalysisProcessorData.Load(
pluginsInputStorage.ConfigFilePath,
pluginsInputStorage.RunDetailsFilePath,
pluginsInputStorage.PmcFilePath,
pluginsInputStorage.FieldDataFilePath,
pluginsInputStorage.AssayFilePath,
analysisLoggerMock.Object);
In = new ReportInMock(_data);
_script = new Script();
((ScriptBase)_script).Init(In, Out);
}
public bool ExecuteFinal(Core.Script script, Core.Transaction transaction, int transactionInputIndex)
{
Contract.Ensures(InFinalState);
Contract.Ensures(ExecutionResult != null);
Execute(script, transaction, transactionInputIndex);
Finish();
return(this.ExecutionResult == true);
}
public bool Execute(Core.Script script, Core.Transaction transaction, int transactionInputIndex)
{
try
{
CurrentScript = script;
CurrentTransaction = transaction;
CurrentTransactionInputIndex = transactionInputIndex;
foreach (var atom in script.Atoms)
{
if (this.ExecutionResult.HasValue)
{
break;
}
if (!atom.CanExecute(this))
{
this.HardFailure = true;
}
atom.Execute(this);
if (atom is Atoms.IVerifyAtom && (atom as Atoms.IVerifyAtom).MustVerify)
{
ExecuteVerify();
}
if (atom is Atoms.OpAtom)
{
++OpAtomsExecuted;
}
++CurrentAtomIndex;
}
}
finally
{
CurrentScript = null;
CurrentTransaction = null;
CurrentTransactionInputIndex = 0;
CurrentAtomIndex = 0;
LastSeparatorAtomIndex = 0;
}
return(this.ExecutionResult != false);
}
