Ejemplo n.º 1
0
 public static void TestGlycanCompositionHypothesis()
 {
     String testGlycanCompositionFile = @"TestData\Glycresoft glycan hypothesis.csv";
     CompositionHypothesis glycanHypothesis = new CompositionHypothesis();
     glycanHypothesis.ParseCompositionHypothesisCsv<GlycanComposition>(testGlycanCompositionFile);
     Console.WriteLine(glycanHypothesis);
 }
Ejemplo n.º 2
0
 public static void TestGlycoPeptideHypothesis()
 {
     String testGlycopeptideCompositionFile = @"TestData\HA-USSR-Glycopeptide hypothesis.csv";
     CompositionHypothesis glycopeptideHypothesis = new CompositionHypothesis();
     glycopeptideHypothesis.ParseCompositionHypothesisCsv<GlycopeptideComposition>(testGlycopeptideCompositionFile);
     Console.WriteLine(glycopeptideHypothesis);
 }
Ejemplo n.º 3
0
 public static void TestBuildGlycoPeptideHypothesis()
 {
     String testGlycanCompositionFile = @"TestData\Glycresoft glycan hypothesis.csv";
     CompositionHypothesis glycanHypothesis = new CompositionHypothesis();
     glycanHypothesis.ParseCompositionHypothesisCsv<GlycanComposition>(testGlycanCompositionFile);
     String testMSDigestFile = @"TestData\KK-USSR-digest-Prospector output.xml";
     MSDigestReport msdigest = MSDigestReport.Load(testMSDigestFile);
     int counter = 0;
     foreach (MSDigestPeptide pep in msdigest.Peptides)
     {
         counter += pep.NumGlycosylations;
         if (counter > 30)
         {
             pep.NumGlycosylations = 0;
         }
     }
     try
     {
         GlycopeptideCompositionHypothesisBuilder builder = new GlycopeptideCompositionHypothesisBuilder(glycanHypothesis, msdigest.Peptides);
         Console.WriteLine("Building Hypothesis");
         builder.BuildCompositionHypothesis();
         Console.WriteLine(builder.GlycopeptideComposition);
         builder.GlycopeptideComposition.WriteCompositionHypothesisCsv("TestData/TestOutputHypothesis.csv");
     }
     catch (OutOfMemoryException ex)
     {
         Console.WriteLine("\n\n\n!!!!!!!!!!!!!!!!Combinatorics exceeded memory size!", ex.Message, "\n\n\n!!!!!!!!!!!!!!!!!!!!!!!!!!");
     }
 }