public static int Main(string[] args)
{
if (args.Length != 2)
{
Console.Write(Environment.NewLine + "Usage: unsetAnnotation <input-filename> <output-filename>" + Environment.NewLine + Environment.NewLine);
return 1;
}
int i, j;
string filename = args[0];
SBMLDocument document;
document = libsbml.readSBML(filename);
int errors = (int)document.getNumErrors();
if (errors > 0)
{
document.printErrors();
return errors;
}
Model m = document.getModel();
m.unsetAnnotation();
for (i = 0; i < m.getNumReactions(); i++)
{
Reaction re = m.getReaction(i);
re.unsetAnnotation();
for (j = 0; j < re.getNumReactants(); j++)
{
SpeciesReference rt = re.getReactant(j);
rt.unsetAnnotation();
}
for (j = 0; j < re.getNumProducts(); j++)
{
SpeciesReference rt = re.getProduct(j);
rt.unsetAnnotation();
}
for (j = 0; j < re.getNumModifiers(); j++)
{
ModifierSpeciesReference md = re.getModifier(j);
md.unsetAnnotation();
}
if (re.isSetKineticLaw())
{
KineticLaw kl = re.getKineticLaw();
kl.unsetAnnotation();
for (j = 0; j < kl.getNumParameters(); j++)
{
Parameter pa = kl.getParameter(j);
pa.unsetAnnotation();
}
}
}
for (i = 0; i < m.getNumSpecies(); i++)
{
Species sp = m.getSpecies(i);
sp.unsetAnnotation();
}
for (i = 0; i < m.getNumCompartments(); i++)
{
Compartment sp = m.getCompartment(i);
sp.unsetAnnotation();
}
for (i = 0; i < m.getNumFunctionDefinitions(); i++)
{
FunctionDefinition sp = m.getFunctionDefinition(i);
sp.unsetAnnotation();
}
for (i = 0; i < m.getNumUnitDefinitions(); i++)
{
UnitDefinition sp = m.getUnitDefinition(i);
sp.unsetAnnotation();
}
for (i = 0; i < m.getNumParameters(); i++)
{
Parameter sp = m.getParameter(i);
sp.unsetAnnotation();
}
for (i = 0; i < m.getNumRules(); i++)
{
Rule sp = m.getRule(i);
sp.unsetAnnotation();
}
for (i = 0; i < m.getNumInitialAssignments(); i++)
{
InitialAssignment sp = m.getInitialAssignment(i);
sp.unsetAnnotation();
}
for (i = 0; i < m.getNumEvents(); i++)
{
Event sp = m.getEvent(i);
sp.unsetAnnotation();
for (j = 0; j < sp.getNumEventAssignments(); j++)
{
EventAssignment ea = sp.getEventAssignment(j);
ea.unsetAnnotation();
}
}
for (i = 0; i < m.getNumSpeciesTypes(); i++)
{
SpeciesType sp = m.getSpeciesType(i);
sp.unsetAnnotation();
}
for (i = 0; i < m.getNumConstraints(); i++)
{
Constraint sp = m.getConstraint(i);
sp.unsetAnnotation();
}
libsbml.writeSBML(document, args[1]);
return errors;
}
