public void Add(PeptideDocNode nodePep, ChromDataSet chromDataSet)
{
// If this is coming from the same PeptideDocNode, then just add it, otherwise
// a merged copy of the PeptideDocNode needs to be created that includes
// this new precursor.
if (ReferenceEquals(nodePep, NodePep))
{
if (!FindAndMerge(chromDataSet))
{
// Not necessary to update children, because found in peptide
AddDataSet(chromDataSet);
}
else
{
// Merging causes a change in the children
UpdatePepChildren();
}
}
// Unless we already have one of these
else if (!HasEquivalentGroupNode(chromDataSet.NodeGroup))
{
if (!FindAndMerge(chromDataSet))
{
AddDataSet(chromDataSet);
}
// Change children no matter what, since this was not in the peptide
UpdatePepChildren();
}
// Important not to lose iRT type
if (nodePep.GlobalStandardType == PeptideDocNode.STANDARD_TYPE_IRT &&
NodePep.GlobalStandardType != PeptideDocNode.STANDARD_TYPE_IRT)
{
NodePep = NodePep.ChangeStandardType(PeptideDocNode.STANDARD_TYPE_IRT);
}
}
private bool FindAndMerge(ChromDataSet chromDataSet)
{
for (int i = 0; i < DataSets.Count; i++)
{
var nodeGroup = DataSets[i].NodeGroup;
if (AreEquivalentGroups(nodeGroup, chromDataSet.NodeGroup))
{
DataSets[i].NodeGroup = nodeGroup.Merge(chromDataSet.NodeGroup);
DataSets[i].Merge(chromDataSet);
return(true);
}
}
return(false);
}
public PeptideChromDataPeak(ChromDataSet data, ChromDataPeakList peakGroup)
{
Data = data;
PeakGroup = peakGroup;
}
private void AddDataSet(ChromDataSet chromDataSet)
{
Assume.IsTrue(DataSets.Count == 0 || DataSets[0].FirstKey.OptionalMaxTime == chromDataSet.FirstKey.OptionalMaxTime);
DataSets.Add(chromDataSet);
}
private static IsotopeLabelType GetSafeLabelType(ChromDataSet dataSet)
{
return(dataSet.NodeGroup != null ? dataSet.NodeGroup.TransitionGroup.LabelType : null);
}
private static bool IsComparable(ChromDataSet dataSet)
{
return(dataSet.NodeGroup != null && dataSet.NodeGroup.RelativeRT != RelativeRT.Unknown);
}
