public override AbstractCertificate ParseServerCertificate(short certificateType, Stream io)
{
switch (certificateType)
{
case CertificateType.CwtPublicKey:
try {
CwtPublicKey cwtPub = CwtPublicKey.Parse(io);
CWT cwtServer = CWT.Decode(cwtPub.EncodedCwt(), CwtTrustKeySet, CwtTrustKeySet);
AsymmetricKeyParameter pubKey = cwtServer.Cnf.Key.AsPublicKey();
SubjectPublicKeyInfo spi = SubjectPublicKeyInfoFactory.CreateSubjectPublicKeyInfo(pubKey);
cwtPub.SetSubjectPublicKeyInfo(spi);
return(cwtPub);
}
catch {
return(null);
}
default:
return(null);
}
}
public void GetCwtKey(CwtPublicKey rpk)
{
try {
CWT cwt = CWT.Decode(rpk.EncodedCwt(), CwtTrustKeySet, CwtTrustKeySet);
AsymmetricKeyParameter pub = cwt.Cnf.Key.AsPublicKey();
SubjectPublicKeyInfo spi = SubjectPublicKeyInfoFactory.CreateSubjectPublicKeyInfo(pub);
rpk.SetSubjectPublicKeyInfo(spi);
AuthenticationKey = cwt.Cnf.Key;
return;
}
catch {
}
TlsEvent ev = new TlsEvent(TlsEvent.EventCode.ServerCertificate)
{
Certificate = rpk
};
EventHandler <TlsEvent> handler = TlsEventHandler;
if (handler != null)
{
handler(this, ev);
}
if (!ev.Processed)
{
throw new TlsFatalAlert(AlertDescription.certificate_unknown);
}
AuthenticationKey = ev.KeyValue;
}
public void test2()
{
double[] signal = new double[]
{ 1385, 1458, 1546, 1359, 1365, 1434, 1344, 1485, 1415, 1327, 1396, 1363, 1418, 1405, 1414, 1481,
1324, 1321, 1260, 1441, 1409, 1501, 1440, 1428, 1456, 1546, 1598, 1444, 1389,
1395, 1425, 1318, 1384, 1489, 1456, 1424, 1491, 1476, 1493, 1470, 1452, 1409, 1463, 1406, 1470, 1506, 1410 };
List <double> t = new List <double>();
for (int i = 0; i < signal.Length; i++)
{
t.Add(i);
}
SortedDictionary <double, List <double> > matrix =
new SortedDictionary <double, List <double> >();
for (int a = 1; a <= 5; a += 1)
{
double[] processed = CWT.Transform(signal, a);
matrix[a] = processed.ToList();
}
RidgeLineFinder coeffMatrix = new RidgeLineFinder();
List <RidgeLine> lines = coeffMatrix.Find(t, matrix);
foreach (var item in lines)
{
Console.WriteLine(item.Pos);
Console.WriteLine(item.Length);
Console.WriteLine(GetString <int>(item.Index));
Console.WriteLine(GetString <double>(item.Trace) + "\n");
}
}
public DTLSClientChannel(CWT cwt, OneKey userKey, KeySet cwtTrustKeys, int port)
{
_port = port;
_userKey = userKey;
_userCwt = cwt;
CwtTrustKeySet = cwtTrustKeys;
}
public void GetCwtKey(CwtPublicKey rpk)
{
CWT cwt;
try {
cwt = CWT.Decode(rpk.EncodedCwt(), CwtTrustRoots, CwtTrustRoots);
AuthenticationKey = cwt.Cnf.Key;
}
catch (Exception e)
{
TlsEvent ev = new TlsEvent(TlsEvent.EventCode.ClientCertificate)
{
Certificate = rpk
};
EventHandler <TlsEvent> handler = TlsEventHandler;
if (handler != null)
{
handler(this, ev);
}
if (!ev.Processed)
{
throw new TlsFatalAlert(AlertDescription.certificate_unknown);
}
AuthenticationKey = ev.KeyValue;
}
}
public void test2()
{
double[] u = new double[] { -2, 1, 3 };
double[] v = new double[] { 3, 4, 1, 5, 6 };
double[] w = CWT.Convolve(u, v);
foreach (double i in w)
{
Console.WriteLine(i);
}
}
private static void AddTlsCwt(string[] commands)
{
if (commands.Length != 4)
{
Console.Write($"Incorrect number of arguments: {commands.Length}");
return;
}
CBORObject cbor = CBORDiagnostics.Parse(commands[2]);
CWT cwt = CWT.Decode(cbor.EncodeToBytes(), CwtRootKeys, CwtRootKeys);
cbor = CBORDiagnostics.Parse(commands[3]);
_TlsKeys.Add(commands[1], new TlsKeyPair(cwt, new OneKey(cbor)));
}
public void test4()
{
double[] t = new double[]
{ 1385, 1458, 1546, 1359, 1365, 1434, 1344, 1485, 1415, 1327, 1396, 1363, 1418, 1405, 1414, 1481, 1324, 1321, 1260, 1441, 1409, 1501, 1440, 1428, 1456, 1546, 1598, 1444, 1389, 1395, 1425, 1318, 1384, 1489, 1456, 1424, 1491, 1476, 1493, 1470, 1452, 1409, 1463, 1406, 1470, 1506, 1410 };
//{
// 1385,1458,1546,1359,1365,1434,1344,1485,1415,1327,1396,1363,1418,1405,1414,1481,1324,1321,1260,1441,1409,1501,1440,1428,1456,1546,1598,1444,1389,1395,1425,1318,1384,1489,1456,1424,1491,1476,1493,1470,1452,1409,1463,1406,1470,1506,1410,1452,1424,1418,1306,1335,1299,1391,1423,1609,1449,1385,1417,1400,1457,1504,1395,1628,1481,1430,1302,1468,1411,1423,1421,1424,1411,1454,1492,1514,1531,1340,1388,1360,1412,1531,1379,1397,1392,1475,1450,1484,1448,1513,1321,1408,1558,1623,1537,1515,1562,1434,1470,1470,1473
//};
double[] y = CWT.Transform(t, 2.0);
foreach (double v in y)
{
Console.WriteLine(v);
}
}
public void test1()
{
var watch = new System.Diagnostics.Stopwatch();
watch.Start();
string path = @"C:\Users\Rui Zhang\Downloads\Serum_1_C18_03292019_Ali.raw";
ISpectrumReader reader = new ThermoRawSpectrumReader();
reader.Init(path);
//for (int i = reader.GetFirstScan(); i < reader.GetLastScan(); i++)
int i = 342;
RidgeLineFinder coeffMatrix = new RidgeLineFinder(1.0, 2, 1, 2);
{
if (reader.GetMSnOrder(i) < 2)
{
ISpectrum spectrum = reader.GetSpectrum(i);
List <IPeak> peaks = spectrum.GetPeaks();
double[] signal = peaks.Select(p => p.GetIntensity()).ToArray();
SortedDictionary <double, List <double> > matrix =
new SortedDictionary <double, List <double> >();
for (double a = 1; a <= 120; a += 6)
{
double[] processed = CWT.Transform(signal, a);
matrix[a] = processed.ToList();
}
List <RidgeLine> lines = coeffMatrix.Find(spectrum.GetPeaks().Select(p => p.GetMZ()).ToList(),
matrix);
Console.WriteLine(lines.Count);
Console.WriteLine(peaks.Count);
foreach (RidgeLine line in lines)
{
Console.WriteLine(line.Pos);
}
}
//break;
}
Console.WriteLine($"Execution Time: {watch.ElapsedMilliseconds} ms");
//Console.Read();
}
public void test3()
{
int n = 20;
double[] t = new double[n];
for (int i = 0; i < n; i++)
{
t[i] = i - (n - 1) / 2.0;
}
double[] y = CWT.Transform(t, 1.0);
foreach (double v in y)
{
Console.WriteLine(v);
}
}
public void Test_Issuer()
{
CWT cwt = new CWT();
Assert.AreEqual(false, cwt.HasClaim(ClaimId.Issuer));
Assert.AreEqual(false, cwt.HasClaim("iss"));
cwt.Issuer = "Audience1";
Assert.AreEqual(true, cwt.HasClaim(ClaimId.Issuer));
Assert.AreEqual(true, cwt.HasClaim("iss"));
Assert.AreEqual("Audience1", cwt.GetClaim(ClaimId.Issuer).AsString());
Assert.AreEqual("Audience1", cwt.GetClaim("iss").AsString());
Assert.AreEqual("Audience1", cwt[ClaimId.Issuer].AsString());
CwtException e = Assert.Throws <CwtException>(() =>
cwt.SetClaim(ClaimId.Issuer, CBORObject.FromObject(1)));
cwt.SetClaim("iss", "TestValue");
Assert.AreEqual(cwt.Issuer, "TestValue");
}
public void Test_Audience()
{
CWT cwt = new CWT();
Assert.AreEqual(false, cwt.HasClaim(ClaimId.Audience));
Assert.AreEqual(false, cwt.HasClaim("aud"));
cwt.Audience = "Audience1";
Assert.AreEqual(true, cwt.HasClaim(ClaimId.Audience));
Assert.AreEqual(true, cwt.HasClaim("aud"));
Assert.AreEqual("Audience1", cwt.GetClaim(ClaimId.Audience).AsString());
Assert.AreEqual("Audience1", cwt.GetClaim("aud").AsString());
Assert.AreEqual("Audience1", cwt[ClaimId.Audience].AsString());
CwtException e = Assert.Throws <CwtException>(() =>
cwt.SetClaim(ClaimId.Audience, CBORObject.FromObject(1)));
cwt.SetClaim("aud", "TestValue");
Assert.AreEqual(cwt.Audience, "TestValue");
}
public TlsKeyPair(CWT publicKey, OneKey privateKey)
{
this.PrivateKey = privateKey;
this.PublicCwt = publicKey;
CertType = CertificateType.CwtPublicKey; // CWT
}
void ProcessFile(FileInfo testCase)
{
if (testCase.Extension != ".json")
{
return;
}
if (testCase.Name[0] == '.')
{
return;
}
Debug.Print($"Working on file {testCase}");
Console.WriteLine("Working on file '" + testCase + "'");
string inputText = testCase.OpenText().ReadToEnd();
CBORObject test = CBORObject.FromJSONString(inputText);
KeySet decodeKeys = new KeySet();
KeySet signKeys = new KeySet();
CBORObject input = test["input"];
CWT cwt = new CWT();
if (input.ContainsKey("encrypted"))
{
OneKey key = LoadKey(input["encrypted"]["key"]);
cwt.EncryptionKey = key;
decodeKeys.AddKey(key);
}
if (input.ContainsKey("mac0"))
{
OneKey key = LoadKey(input["mac0"]["key"]);
cwt.MacKey = key;
decodeKeys.AddKey(key);
}
if (input.ContainsKey("sign0"))
{
OneKey key = LoadKey(input["sign0"]["key"]);
cwt.SigningKey = key;
signKeys.AddKey(key.PublicKey());
}
CWT cwt2 = CWT.Decode(FromHex(test["output"]["cbor"].AsString()), decodeKeys, signKeys);
CBORObject token = input["token"];
foreach (CBORObject key in token.Keys)
{
CBORObject value = token[key];
CBORObject key2 = key;
if (key.AsString().EndsWith("_hex"))
{
value = CBORObject.FromObject(FromHex(value.AsString()));
key2 = CBORObject.FromObject(key.AsString().Substring(0, key.AsString().Length - 4));
}
cwt.SetClaim(key2, value);
Assert.True(cwt2.HasClaim(key2), $"Missing Claim {key2}");
Assert.AreEqual(value, cwt.GetClaim(key2));
}
byte[] foo = cwt.EncodeToBytes();
cwt2 = CWT.Decode(foo, decodeKeys, signKeys);
foreach (CBORObject key in token.Keys)
{
CBORObject value = token[key];
CBORObject key2 = key;
if (key.AsString().EndsWith("_hex"))
{
value = CBORObject.FromObject(FromHex(value.AsString()));
key2 = CBORObject.FromObject(key.AsString().Substring(0, key.AsString().Length - 4));
}
Assert.True(cwt2.HasClaim(key2));
Assert.AreEqual(value, cwt.GetClaim(key2));
}
}
static void Main(string[] args)
{
Options options = null;
ParserResult <Options> optionResult = CommandLine.Parser.Default.ParseArguments <Options>(args)
.WithParsed(o => { options = o; })
.WithNotParsed(o => {
Console.WriteLine("Invalid command line");
Console.WriteLine(o.ToString());
Environment.Exit(1);
});
Console.Title = options.Title;
#if false
{
// Generate a pair of CWT messages signed by a third key.
OneKey clientKey = OneKey.GenerateKey(AlgorithmValues.ECDSA_256, GeneralValues.KeyType_EC);
OneKey serverKey = OneKey.GenerateKey(AlgorithmValues.ECDSA_256, GeneralValues.KeyType_EC);
OneKey caKey = OneKey.GenerateKey(AlgorithmValues.ECDSA_256, GeneralValues.KeyType_EC);
CWT clientCwt = new CWT();
clientCwt.Cnf = new Confirmation(clientKey.PublicKey());
clientCwt.SigningKey = caKey;
CBORObject clientCwtCbor = clientCwt.EncodeToCBOR();
string clientCwtStr = clientCwtCbor.ToString();
byte[] clientCwtBytes = clientCwt.EncodeToBytes();
CWT serverCwt = new CWT()
{
Cnf = new Confirmation(serverKey),
SigningKey = caKey
};
CBORObject serverCwtCbor = serverCwt.EncodeToCBOR();
string serverCwtStr = serverCwtCbor.ToString();
byte[] serverCwtBytes = serverCwt.EncodeToBytes();
string caStr = caKey.EncodeToCBORObject().ToString();
}
#endif
LogManager.Instance = new FileLogManager(Console.Out);
FillDispatchTable(dispatchTable);
Oscore.Register(dispatchTable);
#if DEV_VERSION
Groups.FillDispatchTable(dispatchTable);
#endif
#if DO_ACE
AceAuthz.AddCommands(dispatchTable);
// Setup plain OAuth
AceAuthzHandler = new AceAuthz();
#endif
#if DO_RD
ResourceDirectory.AddCommands(dispatchTable);
#endif
if (options.Script != null)
{
TextReader x = new StreamReader(options.Script);
RunScript(x);
x.Dispose();
}
RunScript(Console.In);
}
