protected IEnumerable<AssayQuantificationMod> GetModifications(Assay assay, ListSelectorControl listBox,
CVLookUp cv)
{
List<AssayQuantificationMod> result = new List<AssayQuantificationMod>();
foreach (var item in listBox.SelectedItems){
string name = item.ToString();
Lib.Model.Param param = cv.GetParam(name, "MOD");
if (param == null){
continue;
}
string position = null;
string site = null;
if (Tables.Modifications.ContainsKey(name)){
var m = Tables.Modifications[name];
if (m != null){
switch (m.Position){
case ModificationPosition.anywhere:
position = "Anywhere";
break;
case ModificationPosition.anyNterm:
position = "Any N-term";
break;
case ModificationPosition.anyCterm:
position = "Any C-term";
break;
case ModificationPosition.proteinNterm:
position = "Protein N-term";
break;
case ModificationPosition.proteinCterm:
position = "Protein C-term";
break;
default:
position = m.Position.ToString();
break;
}
site = m.GetSiteArray() != null ? StringUtils.Concat("|", m.GetSiteArray()) : "-";
}
}
result.Add(new AssayQuantificationMod(assay, result.Count + 1){
Param = param,
Position = position,
Site = site
});
}
return result;
}
protected Assay GetAssay(int id, int _count, string text, CVLookUp _cv)
{
Assay assay = new Assay(id);
if (!string.IsNullOrEmpty(text)){
assay.QuantificationReagent = _cv.GetParam(text, "PRIDE");
}
return assay;
}
