////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
// utilities
private BioBrick findFirstBioBrick(BioBrick.Type type)
{
foreach (BioBrick brick in _currentBioBricks)
{
if (brick.getType() == type)
{
return(brick);
}
}
Logger.Log("CraftZoneManager::findFirstBioBrick(" + type + ") failed with current bricks=" + _currentBioBricks, Logger.Level.TRACE);
return(null);
}
//optionally saves details about biobricks
public void saveDevicesToFile(List <Device> devices, string filePath, bool exhaustive = true)
{
Logger.Log("DeviceSaver::saveDevicesToFile(" + Logger.ToString <Device>(devices) + ", " + filePath + ")", Logger.Level.INFO);
XmlWriterSettings settings = new XmlWriterSettings {
Indent = true
};
using (XmlWriter writer = XmlWriter.Create(filePath, settings))
{
writer.WriteStartDocument();
writer.WriteStartElement(BioBricksXMLTags.DEVICES);
foreach (Device device in devices)
{
writer.WriteStartElement(BioBricksXMLTags.DEVICE);
writer.WriteAttributeString(BioBricksXMLTags.ID, device.getInternalName());
foreach (BioBrick brick in device.getExpressionModules().First.Value.getBioBricks())
{
writer.WriteStartElement(BioBricksXMLTags.BIOBRICK);
writer.WriteAttributeString(BioBricksXMLTags.ID, brick.getName());
if (exhaustive) //saves details about biobricks
{
writer.WriteAttributeString(BioBricksXMLTags.SIZE, brick.getSize().ToString());
BioBrick.Type bioBrickType = brick.getType();
writer.WriteAttributeString(BioBricksXMLTags.TYPE, bioBrickType.ToString().ToLower());
switch (bioBrickType)
{
case BioBrick.Type.PROMOTER:
writer.WriteElementString(BioBricksXMLTags.BETA, ((PromoterBrick)brick).getBeta().ToString());
writer.WriteElementString(BioBricksXMLTags.FORMULA, ((PromoterBrick)brick).getFormula());
break;
case BioBrick.Type.RBS:
writer.WriteElementString(BioBricksXMLTags.RBSFACTOR, ((RBSBrick)brick).getRBSFactor().ToString());
break;
case BioBrick.Type.GENE:
writer.WriteElementString(BioBricksXMLTags.PROTEIN, ((GeneBrick)brick).getProteinName());
break;
case BioBrick.Type.TERMINATOR:
writer.WriteElementString(BioBricksXMLTags.TERMINATORFACTOR, ((TerminatorBrick)brick).getTerminatorFactor().ToString());
break;
default:
Logger.Log("DeviceSaver::saveDevicesToFile unknown biobrick type " + bioBrickType, Logger.Level.WARN);
break;
}
}
writer.WriteEndElement();
}
writer.WriteEndElement();
}
writer.WriteEndElement();
writer.WriteEndDocument();
}
Logger.Log("DeviceSaver.saveDevicesToFile done", Logger.Level.TRACE);
}
private LinkedList <BioBrick> getAvailableBioBricksOfType(BioBrick.Type type)
{
Logger.Log("AvailableBioBricksManager::getAvailableBioBricksOfType(" + type + ")", Logger.Level.TRACE);
return(LinkedListExtensions.Filter <BioBrick>(_availableBioBricks, b => (b.getType() == type)));
}
