//---------------------------------------------------------------------
/// <summary>
/// Initializes the module.
/// </summary>
public static void Initialize()
{
leafBiomassCohorts = PlugIn.ModelCore.Landscape.NewSiteVar<Library.LeafBiomassCohorts.ISiteCohorts>();
biomassCohortsSiteVar = new BiomassCohortsSiteVar(leafBiomassCohorts);
baseCohortsSiteVar = new BaseCohortsSiteVar(leafBiomassCohorts);
timeOfLast = PlugIn.ModelCore.Landscape.NewSiteVar<int>();
// Dead biomass:
surfaceDeadWood = PlugIn.ModelCore.Landscape.NewSiteVar<Layer>();
soilDeadWood = PlugIn.ModelCore.Landscape.NewSiteVar<Layer>();
surfaceStructural = PlugIn.ModelCore.Landscape.NewSiteVar<Layer>();
surfaceMetabolic = PlugIn.ModelCore.Landscape.NewSiteVar<Layer>();
soilStructural = PlugIn.ModelCore.Landscape.NewSiteVar<Layer>();
soilMetabolic = PlugIn.ModelCore.Landscape.NewSiteVar<Layer>();
// Soil Layers
som1surface = PlugIn.ModelCore.Landscape.NewSiteVar<Layer>();
som1soil = PlugIn.ModelCore.Landscape.NewSiteVar<Layer>();
som2 = PlugIn.ModelCore.Landscape.NewSiteVar<Layer>();
som3 = PlugIn.ModelCore.Landscape.NewSiteVar<Layer>();
// Other Layers
stream = PlugIn.ModelCore.Landscape.NewSiteVar<Layer>();
sourceSink = PlugIn.ModelCore.Landscape.NewSiteVar<Layer>();
// Other variables
mineralN = PlugIn.ModelCore.Landscape.NewSiteVar<double>();
resorbedN = PlugIn.ModelCore.Landscape.NewSiteVar<double>();
waterMovement = PlugIn.ModelCore.Landscape.NewSiteVar<double>();
availableWater = PlugIn.ModelCore.Landscape.NewSiteVar<double>();
soilWaterContent = PlugIn.ModelCore.Landscape.NewSiteVar<double>();
decayFactor = PlugIn.ModelCore.Landscape.NewSiteVar<double>();
soilTemperature = PlugIn.ModelCore.Landscape.NewSiteVar<double>();
anaerobicEffect = PlugIn.ModelCore.Landscape.NewSiteVar<double>();
// Annual accumulators
grossMineralization = PlugIn.ModelCore.Landscape.NewSiteVar<double>();
ag_nppC = PlugIn.ModelCore.Landscape.NewSiteVar<double>();
bg_nppC = PlugIn.ModelCore.Landscape.NewSiteVar<double>();
litterfallC = PlugIn.ModelCore.Landscape.NewSiteVar<double>();
monthlyAGNPPC = PlugIn.ModelCore.Landscape.NewSiteVar<double[]>();
monthlyBGNPPC = PlugIn.ModelCore.Landscape.NewSiteVar<double[]>();
monthlyNEE = PlugIn.ModelCore.Landscape.NewSiteVar<double[]>();
AnnualNEE = PlugIn.ModelCore.Landscape.NewSiteVar<double>();
FireCEfflux = PlugIn.ModelCore.Landscape.NewSiteVar<double>();
FireNEfflux = PlugIn.ModelCore.Landscape.NewSiteVar<double>();
monthlyResp = PlugIn.ModelCore.Landscape.NewSiteVar<double[]>();
cohortLeafN = PlugIn.ModelCore.Landscape.NewSiteVar<double>();
cohortLeafC = PlugIn.ModelCore.Landscape.NewSiteVar<double>();
cohortWoodN = PlugIn.ModelCore.Landscape.NewSiteVar<double>();
cohortWoodC = PlugIn.ModelCore.Landscape.NewSiteVar<double>();
TotalWoodBiomass = PlugIn.ModelCore.Landscape.NewSiteVar<double>();
AgeMortality = PlugIn.ModelCore.Landscape.NewSiteVar<double>();
Nvol = PlugIn.ModelCore.Landscape.NewSiteVar<double>();
PrevYearMortality = PlugIn.ModelCore.Landscape.NewSiteVar<int>();
totalNuptake = PlugIn.ModelCore.Landscape.NewSiteVar<double>();
monthlymineralN = PlugIn.ModelCore.Landscape.NewSiteVar<double[]>();
frassC = PlugIn.ModelCore.Landscape.NewSiteVar<double>();
lai = PlugIn.ModelCore.Landscape.NewSiteVar<double>();
HarvestPrescriptionName = PlugIn.ModelCore.GetSiteVar<string>("Harvest.PrescriptionName");
PlugIn.ModelCore.RegisterSiteVar(leafBiomassCohorts, "Succession.LeafBiomassCohorts");
PlugIn.ModelCore.RegisterSiteVar(biomassCohortsSiteVar, "Succession.BiomassCohorts");
PlugIn.ModelCore.RegisterSiteVar(baseCohortsSiteVar, "Succession.AgeCohorts");
foreach (ActiveSite site in PlugIn.ModelCore.Landscape)
{
// site cohorts are initialized by the PlugIn.InitializeSite method
//leafBiomassCohorts[site] = new SiteCohorts();
//Console.Write("-");
surfaceDeadWood[site] = new Layer(LayerName.Wood, LayerType.Surface);
soilDeadWood[site] = new Layer(LayerName.CoarseRoot, LayerType.Soil);
surfaceStructural[site] = new Layer(LayerName.Structural, LayerType.Surface);
surfaceMetabolic[site] = new Layer(LayerName.Metabolic, LayerType.Surface);
soilStructural[site] = new Layer(LayerName.Structural, LayerType.Soil);
soilMetabolic[site] = new Layer(LayerName.Metabolic, LayerType.Soil);
som1surface[site] = new Layer(LayerName.SOM1, LayerType.Surface);
som1soil[site] = new Layer(LayerName.SOM1, LayerType.Soil);
som2[site] = new Layer(LayerName.SOM2, LayerType.Soil);
som3[site] = new Layer(LayerName.SOM3, LayerType.Soil);
stream[site] = new Layer(LayerName.Other, LayerType.Other);
sourceSink[site] = new Layer(LayerName.Other, LayerType.Other);
monthlyAGNPPC[site] = new double[12];
monthlyBGNPPC[site] = new double[12];
monthlyNEE[site] = new double[12];
monthlyResp[site] = new double[12];
//monthlymineralN[site] = new double[12];
AvailableN.CohortResorbedNallocation = new Dictionary<int, Dictionary<int, double>>();
}
}
//---------------------------------------------------------------------
/// <summary>
/// Initializes the module.
/// </summary>
public static void Initialize()
{
biomassCohorts = PlugIn.ModelCore.Landscape.NewSiteVar<Library.BiomassCohorts.SiteCohorts>();
baseCohortsSiteVar = new BaseCohortsSiteVar(biomassCohorts);
woodyDebris = PlugIn.ModelCore.Landscape.NewSiteVar<Pool>();
litter = PlugIn.ModelCore.Landscape.NewSiteVar<Pool>();
percentShade = PlugIn.ModelCore.Landscape.NewSiteVar<double>();
lightTrans = PlugIn.ModelCore.Landscape.NewSiteVar<double>();
ag_npp = PlugIn.ModelCore.Landscape.NewSiteVar<double>();
previousYearMortality = PlugIn.ModelCore.Landscape.NewSiteVar<int>();
currentYearMortality = PlugIn.ModelCore.Landscape.NewSiteVar<int>();
totalBiomass = PlugIn.ModelCore.Landscape.NewSiteVar<int>();
foreach (ActiveSite site in PlugIn.ModelCore.Landscape)
{
// site cohorts are initialized by the PlugIn.InitializeSite method
woodyDebris[site] = new Pool();
litter[site] = new Pool();
}
currentYearMortality.ActiveSiteValues = 0;
previousYearMortality.ActiveSiteValues = 0;
PlugIn.ModelCore.RegisterSiteVar(biomassCohorts, "Succession.BiomassCohorts");
PlugIn.ModelCore.RegisterSiteVar(baseCohortsSiteVar, "Succession.BaseCohorts");
PlugIn.ModelCore.RegisterSiteVar(SiteVars.WoodyDebris, "Succession.WoodyDebris");
PlugIn.ModelCore.RegisterSiteVar(SiteVars.Litter, "Succession.Litter");
}
