public void DisplayBasicRunInfo(Backend.Runs.UIMFRun run)
{
StringBuilder sb = new StringBuilder();
sb.Append("field\tvalue\n");
sb.Append("filename\t" + run.Filename + "\n");
sb.Append("filetype\t" + run.MSFileType + "\n");
sb.Append("minFrame\t" + run.MinLCScan + "\n");
sb.Append("maxFrame\t" + run.MaxLCScan + "\n");
sb.Append("minScan\t" + run.MinIMSScan + "\n");
sb.Append("maxScan\t" + run.MaxIMSScan + "\n");
Console.WriteLine(sb.ToString());
}
public void GenerateMassSpectraForRanges(Backend.Runs.UIMFRun run, int startFrame, int stopFrame, int startScan, int stopScan)
{
StringBuilder sb = new StringBuilder();
run.ScanSetCollection.Create(run, startFrame, stopFrame, 1, 1);
run.IMSScanSetCollection.Create(run, startScan, stopScan, 1, 1);
UIMF_MSGenerator msgen = new UIMF_MSGenerator();
foreach (var frame in run.ScanSetCollection.ScanSetList)
{
run.CurrentScanSet = frame;
foreach (var scan in run.ScanSetCollection.ScanSetList)
{
run.CurrentScanSet = scan;
sb.Append(frame.PrimaryScanNumber);
sb.Append("\t");
sb.Append(scan.PrimaryScanNumber);
sb.Append("\t");
try
{
msgen.Execute(run.ResultCollection);
sb.Append("Passed");
}
catch (Exception ex)
{
sb.Append("FAILED. \t" + ex.Message);
}
sb.Append(Environment.NewLine);
}
}
Console.WriteLine(sb.ToString());
}
