static void Debug()
{
//AUP.UploadZip("44186", "47777", @"d:\temp\1.3.12.2.1107.5.1.4.65115.3000001603240736279390001264491.zip", "henryknipe", "20160411091821_henryknipe", "1.3.12.2.1107.5.8.9.13.26.65.26.126.218.77882191");
APetaPoco.SetConnectionString("cn1");
var bm = APetaPoco.PpRetrieveOne <DbCase>("Cases", "[case_id] = '20160607180814_frank'");
var pcase = (DbCase)bm.Data;
bm = APetaPoco.PpRetrieveList <DbStudy>("Studies", "[case_id] = '20160607180814_frank'");
pcase.study_list = (List <DbStudy>)bm.Data;
foreach (var st in pcase.study_list)
{
bm = APetaPoco.PpRetrieveList <DbSeries>("Series", "[case_id] = '20160607180814_frank' AND [study_uid] = '" + st.study_uid + "'");
st.series = (List <DbSeries>)bm.Data;
//ADCM.DownloadStudy(st);
LOG.Write("Converting DCM to PNG...");
AIMG.MultiFrameProcess(st);
bool convertComplete = AIMG.ConvertDcmToPng(st);
//if (!convertComplete)
//{
// ACASE.ClearCaseFiles(pcase);
// throw new Exception("Unable to convert study to PNG");
//}
LOG.Write("Completed image conversion");
LOG.Write("Optimizing PNG's for study...");
AIMG.OptiPng(st);
LOG.Write("Completed optimization.");
//AIMG.ZipSeries(st);
}
//ACASE.ProcessCase(pcase);
}
public void HandleAllGetRequests(HttpListenerContext context)
{
var rc = new ResponseClass();
string studyuid = context.Request.QueryString["studyuid"];
string seriesuid = context.Request.QueryString["seriesuid"];
string check = context.Request.QueryString["check"];
if (!string.IsNullOrEmpty(check))
{
rc.Success = true;
rc.Message = "";
rc.Data = true;
string json = Newtonsoft.Json.JsonConvert.SerializeObject(rc);
this.SendTextResponse(context, json);
return;
}
var node = ADCM.GetSelectedNode();
try
{
LOG.Write("New request");
if (string.IsNullOrEmpty(studyuid) || string.IsNullOrEmpty(seriesuid))
{
throw new Exception("No studyuid or seriesuid provided");
}
bool downloaded = ADCM.DownloadOneSeries(studyuid, seriesuid);
if (!downloaded)
{
throw new Exception("Unable to download study");
}
string seriesPath = Path.Combine(node.LocalStorage, studyuid, seriesuid);
if (!Directory.Exists(seriesPath))
{
throw new Exception("Series path not found: " + seriesPath);
}
var dcmFiles = Directory.GetFiles(seriesPath, "*.dcm");
string filetouse = null;
decimal mid = dcmFiles.Length / 2;
int index = (int)Math.Ceiling(mid);
for (int i = index; i < dcmFiles.Length; i++)
{
var dcm = dcmFiles[i];
ClearCanvas.Dicom.DicomFile dcmFile = new ClearCanvas.Dicom.DicomFile(dcm);
dcmFile.Load();
ClearCanvas.ImageViewer.StudyManagement.LocalSopDataSource localds = new ClearCanvas.ImageViewer.StudyManagement.LocalSopDataSource(dcmFile);
if (!localds.IsImage)
{
continue;
}
else
{
filetouse = dcm;
break;
}
}
if (string.IsNullOrEmpty(filetouse))
{
for (int i = 0; i < dcmFiles.Length; i++)
{
var dcm = dcmFiles[i];
ClearCanvas.Dicom.DicomFile dcmFile = new ClearCanvas.Dicom.DicomFile(dcm);
dcmFile.Load();
ClearCanvas.ImageViewer.StudyManagement.LocalSopDataSource localds = new ClearCanvas.ImageViewer.StudyManagement.LocalSopDataSource(dcmFile);
if (!localds.IsImage)
{
continue;
}
else
{
filetouse = dcm;
break;
}
}
}
if (string.IsNullOrEmpty(filetouse))
{
throw new Exception("Unable to find image in downloaded DICOM files");
}
if (!File.Exists(filetouse))
{
throw new Exception("Unable to find DICOM file to use");
}
string base64String = Convert.ToBase64String(AIMG.GetImageBytesFromDcm(filetouse));
base64String = "data:image/jpeg;base64," + base64String;
rc.Success = true;
rc.Message = "";
rc.Data = base64String;
string json = Newtonsoft.Json.JsonConvert.SerializeObject(rc);
this.SendTextResponse(context, json);
}
catch (Exception ex)
{
LOG.Write("ERROR: " + ex.Message);
rc.Data = null;
rc.Success = false;
rc.Message = ex.Message;
string json = Newtonsoft.Json.JsonConvert.SerializeObject(rc);
this.SendTextResponse(context, json);
}
finally
{
string studypath = Path.Combine(node.LocalStorage, studyuid);
if (Directory.Exists(studypath))
{
Directory.Delete(studypath, true);
}
}
}
public static void ProcessCase(DbCase pcase)
{
try
{
LOG.Write("Checking user quotas...");
if (!CheckQuotas(pcase))
{
throw new Exception("Quota exceeded");
}
LOG.Write("Creating case on Radiopaedia...");
pcase.r_case_id = AUP.CreateCase(pcase);
if (string.IsNullOrEmpty(pcase.r_case_id))
{
throw new Exception("Unable to create case id, cannot continue");
}
LOG.Write("Case created id: " + pcase.r_case_id);
if (pcase.study_list == null || pcase.study_list.Count < 1)
{
pcase.study_list = GetStudiesForCase(pcase.case_id);
if (pcase.study_list == null || pcase.study_list.Count < 1)
{
throw new Exception("No studies in case: " + pcase.case_id);
}
}
foreach (var st in pcase.study_list)
{
LOG.InsertEvent("Starting to process case: " + pcase.case_id, "AGENT", null, pcase.case_id);
LOG.Write("Creating Radiopaedia Study...");
st.r_study_id = AUP.CreateStudy(st, pcase.username, pcase.r_case_id);
if (string.IsNullOrEmpty(st.r_study_id))
{
throw new Exception("Unable to create study id on Radiopaedia");
}
LOG.Write("Study ID created: " + st.r_study_id);
LOG.Write("Study: " + st.description + "[" + st.modality + "]");
LOG.Write("Downloading...");
bool downloadComplete = ADCM.DownloadStudy(st, 0);
if (!downloadComplete)
{
ClearCaseFiles(pcase);
throw new Exception("Unable to download study - can't continue");
}
LOG.Write("Download finished");
LOG.Write("Converting DCM to PNG...");
AIMG.MultiFrameProcess(st);
bool convertComplete = AIMG.ConvertDcmToPng(st);
if (!convertComplete)
{
ClearCaseFiles(pcase);
throw new Exception("Unable to convert study to PNG");
}
LOG.Write("Completed image conversion");
LOG.Write("Deleting excess images...");
AIMG.DeleteExcessImages(st);
LOG.Write("Completed deleting excess images.");
LOG.Write("Optimizing PNG's for study...");
AIMG.OptiPng(st);
LOG.Write("Completed optimization.");
bool zipComplete = AIMG.ZipSeries(st);
if (!zipComplete)
{
throw new Exception("Unable to create zips for study");
}
string outPath = Path.Combine(ADCM.GetStoreString(), "OUTPUT", pcase.case_id, st.study_uid);
var zips = Directory.GetFiles(outPath, "*.zip");
foreach (var z in zips)
{
string fileName = Path.GetFileName(z);
string[] sizes = { "B", "KB", "MB", "GB" };
double len = new FileInfo(z).Length;
int order = 0;
while (len >= 1024 && ++order < sizes.Length)
{
len = len / 1024;
}
LOG.Write(string.Format("Uploading: {2} ({0:0.##} {1})", len, sizes[order], fileName));
bool uploadedZip = AUP.UploadZip2(pcase.r_case_id, st.r_study_id, z, pcase.username, pcase.case_id, st.study_uid);
if (!uploadedZip)
{
try
{
LOG.Write("Retry maxed out, copying zip to error output");
string errorFolder = Path.Combine(@".\Error_uploads\", pcase.case_id);
if (!Directory.Exists(errorFolder))
{
Directory.CreateDirectory(errorFolder);
}
string errorPath = Path.Combine(errorFolder, fileName);
File.Copy(z, errorPath);
}
catch
{
continue;
}
}
LOG.Write("Finished uploading");
}
}
LOG.Write("Marking case as completed");
AUP.MarkCaseComplete(pcase.r_case_id, pcase.username, pcase.case_id);
SetCaseStatus(pcase, "COMPLETED", "Case fully uploaded: http://radiopaedia.org/cases/" + pcase.r_case_id);
System.Threading.Thread.Sleep(1000);
LOG.Write("Finished with case: " + pcase.case_id);
ClearCaseFiles(pcase);
LOG.InsertEvent("Finished with case: " + pcase.case_id, "AGENT", null, pcase.case_id);
}
catch (Exception ex)
{
string errorString = "Error at :" + System.Reflection.MethodBase.GetCurrentMethod().Name;
LOG.Write(errorString);
LOG.Write(ex.Message);
LOG.InsertEvent(errorString, "AGENT", ex.Message, pcase.case_id);
SetCaseStatus(pcase, "ERROR", ex.Message);
ClearCaseFiles(pcase);
}
finally { GC.Collect(); }
}
