public void Add()
{
using (var dlg = new AddPeakCompareDlg(Document, _peakBoundaryList))
{
if (dlg.ShowDialog(this) == DialogResult.OK)
{
_peakBoundaryList.Add(dlg.BoundaryComparer);
UpdateCheckedList();
UpdateAll();
}
}
}
public ComparePeakBoundaries EditItem(Control owner, ComparePeakBoundaries item,
IEnumerable <ComparePeakBoundaries> existing, object tag)
{
var document = tag as SrmDocument;
using (var dlg = new AddPeakCompareDlg(document, item, existing))
{
return(dlg.ShowDialog(owner) == DialogResult.OK ?
dlg.BoundaryComparer :
default(ComparePeakBoundaries));
}
}
private void TestErrors(AddPeakCompareDlg addPeakCompareDlg, string peakBoundariesFile)
{
// 1. Blank name gives error
RunUI(() => addPeakCompareDlg.IsModel = false);
MessageDlgError(addPeakCompareDlg.OkDialog, Resources.AddPeakCompareDlg_OkDialog_Comparison_name_cannot_be_empty_);
// 2. Blank file path gives error
RunUI(() => addPeakCompareDlg.FileName = "OpenSwathNew");
MessageDlgError(addPeakCompareDlg.OkDialog, Resources.AddPeakCompareDlg_OkDialog_File_path_cannot_be_empty_);
// 3. Non-existent file gives error
RunUI(() => addPeakCompareDlg.FilePath = "bad_file_path");
MessageDlgError(addPeakCompareDlg.OkDialog, Resources.AddPeakCompareDlg_OkDialog_File_path_field_must_contain_a_path_to_a_valid_file_);
// 4. Same name as existing gives error
RunUI(() => addPeakCompareDlg.FileName = "OpenSwath");
RunUI(() => addPeakCompareDlg.FilePath = peakBoundariesFile);
MessageDlgError(addPeakCompareDlg.OkDialog, Resources.AddPeakCompareDlg_OkDialog_There_is_already_an_imported_file_with_the_current_name___Please_choose_another_name);
// 5. Attempt to re-load same model gives error
RunUI(() => addPeakCompareDlg.IsModel = true);
RunUI(() => addPeakCompareDlg.PeakScoringModelSelected = "full model");
MessageDlgError(addPeakCompareDlg.OkDialog, Resources.AddPeakCompareDlg_OkDialog_The_selected_model_is_already_included_in_the_list_of_comparisons__Please_choose_another_model_);
// 6. Selecting an untrained model leads to error
RunUI(() => addPeakCompareDlg.PeakScoringModelSelected = "untrained");
MessageDlgError(addPeakCompareDlg.OkDialog, Resources.AddPeakCompareDlg_OkDialog_Model_must_be_trained_before_it_can_be_used_for_peak_boundary_comparison_);
// 7. File with unreadable q value produces error
var peakBoundariesBadQ = GetLocalizedFile("OpenSwathPeaksBadQ.csv");
RunUI(() => addPeakCompareDlg.IsModel = false);
RunUI(() => addPeakCompareDlg.FileName = "OpenSwathBad");
RunUI(() => addPeakCompareDlg.FilePath = peakBoundariesBadQ);
MessageDlgError(addPeakCompareDlg.OkDialog, string.Format(Resources.AddPeakCompareDlg_OkDialog_Error_applying_imported_peak_boundaries___0_,
string.Format(Resources.PeakBoundsMatch_QValue_Unable_to_read_q_value_annotation_for_peptide__0__of_file__1_,
"APIPTALDTDSSK",
"napedro_L120420_007_SW")));
// 8. File with unreadable score produces error
var peakBoundariesBadScore = GetLocalizedFile("OpenSwathPeaksBadScore.csv");
RunUI(() => addPeakCompareDlg.IsModel = false);
RunUI(() => addPeakCompareDlg.FileName = "OpenSwathBad");
RunUI(() => addPeakCompareDlg.FilePath = peakBoundariesBadScore);
MessageDlgError(addPeakCompareDlg.OkDialog, string.Format(Resources.AddPeakCompareDlg_OkDialog_Error_applying_imported_peak_boundaries___0_,
string.Format(Resources.PeakBoundsMatch_QValue_Unable_to_read_q_value_annotation_for_peptide__0__of_file__1_,
"APIPTALDTDSSK",
"napedro_L120420_007_SW")));
// 9. File with missing q value column and score column produces error
var peakBoundariesMissing = GetLocalizedFile("OpenSwathPeaksMissingQScores.csv");
RunUI(() => addPeakCompareDlg.IsModel = false);
RunUI(() => addPeakCompareDlg.FileName = "OpenSwathMissing");
RunUI(() => addPeakCompareDlg.FilePath = peakBoundariesMissing);
MessageDlgError(addPeakCompareDlg.OkDialog, string.Format(Resources.AddPeakCompareDlg_OkDialog_Error_applying_imported_peak_boundaries___0_,
Resources.AddPeakCompareDlg_OkDialog_The_current_file_or_model_has_no_q_values_or_scores_to_analyze___Either_q_values_or_scores_are_necessary_to_compare_peak_picking_tools_));
// 10. Empty file leads to error
var peakBoundariesEmpty = GetLocalizedFile("OpenSwathPeaksEmpty.csv");
RunUI(() => addPeakCompareDlg.IsModel = false);
RunUI(() => addPeakCompareDlg.FileName = "OpenSwathEmpty");
RunUI(() => addPeakCompareDlg.FilePath = peakBoundariesEmpty);
MessageDlgError(addPeakCompareDlg.OkDialog, string.Format(Resources.AddPeakCompareDlg_OkDialog_Error_applying_imported_peak_boundaries___0_,
Resources.AddPeakCompareDlg_OkDialog_The_selected_file_or_model_does_not_assign_peak_boundaries_to_any_chromatograms_in_the_document___Please_select_a_different_model_or_file_));
// 11. Apex-based file with bad apex entry leads to error
var peakBoundariesApex = GetLocalizedFile("OpenSwathPeaksBadApex.csv");
RunUI(() => addPeakCompareDlg.IsModel = false);
RunUI(() => addPeakCompareDlg.FileName = "OpenSwathBadApex");
RunUI(() => addPeakCompareDlg.FilePath = peakBoundariesApex);
MessageDlgError(addPeakCompareDlg.OkDialog, string.Format(Resources.AddPeakCompareDlg_OkDialog_Error_applying_imported_peak_boundaries___0_,
string.Format(Resources.PeakBoundsMatch_PeakBoundsMatch_Unable_to_read_apex_retention_time_value_for_peptide__0__of_file__1__,
"DITAFDETLFR",
"napedro_L120420_007_SW")));
}
