internal IList <long> GetProteinIdsThatMightHaveSequence(IStatelessSession session, ICollection <string> sequencesToLookFor)
{
Func <ICollection <String>, IEnumerable <long> > functionToCall;
IList <String> uniqueStrings;
bool useSubsequenceTable;
if (UseSubsequenceTable.HasValue)
{
useSubsequenceTable = UseSubsequenceTable.Value;
}
else
{
useSubsequenceTable = ProteomeDb.HasSubsequencesTable(() => session.Connection) &&
!sequencesToLookFor.Any(s => s.Length < ProteomeDb.MIN_SEQUENCE_LENGTH);
}
if (useSubsequenceTable)
{
functionToCall = batchedArgs => QuerySubsequencesTableForSubstrings(session, batchedArgs);
uniqueStrings = RemoveSuperstrings(sequencesToLookFor
.Select(s => s.Substring(0, Math.Min(s.Length, ProteomeDb.MAX_SEQUENCE_LENGTH))));
}
else
{
functionToCall = batchedArgs => QueryProteinTableForSubstrings(session, batchedArgs);
uniqueStrings = RemoveSuperstrings(sequencesToLookFor);
}
return(ProteomeDb.BatchUpArgumentsForFunction(functionToCall, uniqueStrings, 500).Distinct().ToArray());
}
