getNumCompartments() public method

public getNumCompartments ( ) : long
return long
Beispiel #1
0
 public void test_Model_addCompartment2()
 {
     Model m = new  Model(2,2);
       Compartment c = new  Compartment(2,1);
       c.setId( "c");
       int i = m.addCompartment(c);
       assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH );
       assertTrue( m.getNumCompartments() == 0 );
       c = null;
       m = null;
 }
Beispiel #2
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        protected override void Import(Model sbmlModel)
        {
            CreateTopContainer(sbmlModel);
            CreateEventsTopContainer();

            for (long i = 0; i < sbmlModel.getNumCompartments(); i++)
            {
                _topContainer.Add(CreateContainerFromCompartment(sbmlModel.getCompartment(i)));
            }
            CreateSpatialStructureFromModel(_topContainer, sbmlModel.getModel());
            AddToProject();
        }
Beispiel #3
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 public void test_Model_addCompartment1()
 {
     Model m = new  Model(2,2);
       Compartment c = new  Compartment(2,2);
       int i = m.addCompartment(c);
       assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT );
       c.setId( "c");
       i = m.addCompartment(c);
       assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
       assertTrue( m.getNumCompartments() == 1 );
       c = null;
       m = null;
 }
Beispiel #4
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 public void test_Model_addCompartment4()
 {
     Model m = new  Model(2,2);
       Compartment c = null;
       int i = m.addCompartment(c);
       assertTrue( i == libsbml.LIBSBML_OPERATION_FAILED );
       assertTrue( m.getNumCompartments() == 0 );
       m = null;
 }
Beispiel #5
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 public void test_Model_createCompartment()
 {
     Model m = new  Model(2,2);
       Compartment p = m.createCompartment();
       assertTrue( m.getNumCompartments() == 1 );
       assertTrue( (p).getLevel() == 2 );
       assertTrue( (p).getVersion() == 2 );
       m = null;
 }
Beispiel #6
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 public void test_Model_addCompartment5()
 {
     Model m = new  Model(2,2);
       Compartment c = new  Compartment(2,2);
       c.setId( "c");
       Compartment c1 = new  Compartment(2,2);
       c1.setId( "c");
       int i = m.addCompartment(c);
       assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
       assertTrue( m.getNumCompartments() == 1 );
       i = m.addCompartment(c1);
       assertTrue( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID );
       assertTrue( m.getNumCompartments() == 1 );
       c = null;
       c1 = null;
       m = null;
 }
Beispiel #7
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 public void test_ReadSBML_Compartment_L2()
 {
     Compartment c;
       string s = wrapSBML_L2v1("<listOfCompartments>" +
     "  <compartment id='membrane' size='.3' spatialDimensions='2'" +
     "               units='area' outside='tissue' constant='false'/>" +
     "</listOfCompartments>");
       D = libsbml.readSBMLFromString(s);
       M = D.getModel();
       assertTrue( M.getNumCompartments() == 1 );
       c = M.getCompartment(0);
       assertEquals( true, c.isSetId() );
       assertEquals( false, c.isSetName() );
       assertEquals( true, c.isSetVolume() );
       assertEquals( true, c.isSetSize() );
       assertEquals( true, c.isSetUnits() );
       assertEquals( true, c.isSetOutside() );
       assertTrue((  "membrane"  == c.getId() ));
       assertTrue((  "area"      == c.getUnits() ));
       assertTrue((  "tissue"    == c.getOutside() ));
       assertTrue( c.getSpatialDimensions() == 2 );
       assertTrue( c.getSize() == .3 );
 }
Beispiel #8
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 public void test_ReadSBML_Compartment_defaults_L2()
 {
     Compartment c;
       string s = wrapSBML_L2v1("<listOfCompartments> <compartment id='cell'/> </listOfCompartments>"
     );
       D = libsbml.readSBMLFromString(s);
       M = D.getModel();
       assertTrue( M.getNumCompartments() == 1 );
       c = M.getCompartment(0);
       assertEquals( true, c.isSetId() );
       assertEquals( false, c.isSetName() );
       assertEquals( false, c.isSetSize() );
       assertEquals( false, c.isSetUnits() );
       assertEquals( false, c.isSetOutside() );
       assertTrue((  "cell"  == c.getId() ));
       assertTrue( c.getSpatialDimensions() == 3 );
       assertTrue( c.getConstant() == true );
 }
Beispiel #9
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 public void test_ReadSBML_Compartment_defaults()
 {
     Compartment c;
       string s = wrapSBML_L1v2("<listOfCompartments> <compartment name='cell'/> </listOfCompartments>"
     );
       D = libsbml.readSBMLFromString(s);
       M = D.getModel();
       assertTrue( M.getNumCompartments() == 1 );
       c = M.getCompartment(0);
       assertEquals( true, c.isSetId() );
       assertEquals( true, c.isSetVolume() );
       assertEquals( false, c.isSetSize() );
       assertEquals( false, c.isSetUnits() );
       assertEquals( false, c.isSetOutside() );
       assertTrue((  "cell"  == c.getId() ));
       assertTrue( c.getVolume() == 1.0 );
 }
Beispiel #10
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 public void test_ReadSBML_Compartment()
 {
     Compartment c;
       string s = wrapSBML_L1v2("<listOfCompartments>" +
     "  <compartment name='mitochondria' volume='.0001' units='milliliters'" +
     "               outside='cell'/>" +
     "</listOfCompartments>");
       D = libsbml.readSBMLFromString(s);
       M = D.getModel();
       assertTrue( M.getNumCompartments() == 1 );
       c = M.getCompartment(0);
       assertTrue((  "mitochondria"  == c.getId() ));
       assertTrue((  "milliliters"   == c.getUnits() ));
       assertTrue((  "cell"          == c.getOutside() ));
       assertTrue( c.getVolume() == .0001 );
       assertEquals( true, c.isSetVolume() );
       assertEquals( true, c.isSetSize() );
 }