public void test_ASTNode_canonicalizeConstants()
{
ASTNode n = new ASTNode();
n.setName( "ExponentialE");
assertEquals( true, n.isName() );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_CONSTANT_E );
n.setType(libsbml.AST_NAME);
n.setName( "False");
assertEquals( true, n.isName() );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_CONSTANT_FALSE );
n.setType(libsbml.AST_NAME);
n.setName( "Pi");
assertEquals( true, n.isName() );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_CONSTANT_PI );
n.setType(libsbml.AST_NAME);
n.setName( "True");
assertEquals( true, n.isName() );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_CONSTANT_TRUE );
n.setType(libsbml.AST_NAME);
n.setName( "Foo");
assertEquals( true, n.isName() );
n.canonicalize();
assertEquals( true, n.isName() );
n = null;
}
public void test_element_csymbol_delay_1()
{
string s = wrapMathML("<csymbol encoding='text' " + "definitionURL='http://www.sbml.org/sbml/symbols/delay'> delay </csymbol>");
N = libsbml.readMathMLFromString(s);
assertTrue( N != null );
assertTrue( N.getType() == libsbml.AST_FUNCTION_DELAY );
assertTrue(( "delay" == N.getName() ));
assertTrue( N.getNumChildren() == 0 );
}
public void test_element_math()
{
string s = wrapXML("<math xmlns='http://www.w3.org/1998/Math/MathML'/>"
);
N = libsbml.readMathMLFromString(s);
assertTrue( N != null );
assertTrue( N.getType() == libsbml.AST_UNKNOWN );
}
public void test_element_cn_units()
{
string s = wrapMathMLUnits("<cn sbml:units=\"mole\"> 12345.7 </cn>");
N = libsbml.readMathMLFromString(s);
assertTrue( N != null );
assertTrue( N.getType() == libsbml.AST_REAL );
assertTrue( N.getReal() == 12345.7 );
assertTrue( N.getUnits() == "mole" );
assertTrue( N.getNumChildren() == 0 );
}
public void test_element_constants_notanumber()
{
string s = wrapMathML("<notanumber/>");
N = libsbml.readMathMLFromString(s);
assertTrue( N != null );
assertTrue( N.getType() == libsbml.AST_REAL );
assertEquals( true, isnan(N.getReal()) );
assertTrue( N.getNumChildren() == 0 );
}
public void test_element_cn_e_notation()
{
string s = wrapMathML("<cn type='e-notation'> 12.3 <sep/> 5 </cn>");
N = libsbml.readMathMLFromString(s);
assertTrue( N != null );
assertTrue( N.getType() == libsbml.AST_REAL_E );
assertTrue( N.getMantissa() == 12.3 );
assertTrue( N.getExponent() == 5 );
assertTrue( N.getNumChildren() == 0 );
}
public void test_element_cn_rational()
{
string s = wrapMathML("<cn type='rational'> 12342 <sep/> 2342342 </cn>"
);
N = libsbml.readMathMLFromString(s);
assertTrue( N != null );
assertTrue( N.getType() == libsbml.AST_RATIONAL );
assertTrue( N.getNumerator() == 12342 );
assertTrue( N.getDenominator() == 2342342 );
assertTrue( N.getNumChildren() == 0 );
}
public void test_ASTNode_create()
{
ASTNode n = new ASTNode();
EventAssignment ea = new EventAssignment(2,4);
assertTrue( n.getType() == libsbml.AST_UNKNOWN );
assertTrue( n.getCharacter() == '\0' );
assertTrue( n.getName() == null );
assertTrue( n.getInteger() == 0 );
assertTrue( n.getExponent() == 0 );
assertTrue( n.getNumChildren() == 0 );
assertTrue( n.getParentSBMLObject() == null );
ea = null;
n = null;
}
public void test_ASTNode_deepCopy_1()
{
ASTNode node = new ASTNode();
ASTNode child, copy;
node.setCharacter( '+');
node.addChild(new ASTNode());
node.addChild(new ASTNode());
node.getLeftChild().setValue(1);
node.getRightChild().setValue(2);
assertTrue( node.getType() == libsbml.AST_PLUS );
assertTrue( node.getCharacter() == '+' );
assertTrue( node.getNumChildren() == 2 );
child = node.getLeftChild();
assertTrue( child.getType() == libsbml.AST_INTEGER );
assertTrue( child.getInteger() == 1 );
assertTrue( child.getNumChildren() == 0 );
child = node.getRightChild();
assertTrue( child.getType() == libsbml.AST_INTEGER );
assertTrue( child.getInteger() == 2 );
assertTrue( child.getNumChildren() == 0 );
copy = node.deepCopy();
assertTrue( copy != node );
assertTrue( copy.getType() == libsbml.AST_PLUS );
assertTrue( copy.getCharacter() == '+' );
assertTrue( copy.getNumChildren() == 2 );
child = copy.getLeftChild();
assertTrue( child != node.getLeftChild() );
assertTrue( child.getType() == libsbml.AST_INTEGER );
assertTrue( child.getInteger() == 1 );
assertTrue( child.getNumChildren() == 0 );
child = copy.getRightChild();
assertTrue( child != node.getRightChild() );
assertTrue( child.getType() == libsbml.AST_INTEGER );
assertTrue( child.getInteger() == 2 );
assertTrue( child.getNumChildren() == 0 );
node = null;
copy = null;
}
public void test_ASTNode_canonicalizeLogical()
{
ASTNode n = new ASTNode(libsbml.AST_FUNCTION);
n.setName( "and");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_LOGICAL_AND );
n.setType(libsbml.AST_FUNCTION);
n.setName( "not");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_LOGICAL_NOT );
n.setType(libsbml.AST_FUNCTION);
n.setName( "or");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_LOGICAL_OR );
n.setType(libsbml.AST_FUNCTION);
n.setName( "xor");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_LOGICAL_XOR );
n.setType(libsbml.AST_FUNCTION);
n = null;
}
public void test_ASTNode_canonicalizeRelational()
{
ASTNode n = new ASTNode(libsbml.AST_FUNCTION);
n.setName( "eq");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_RELATIONAL_EQ );
n.setType(libsbml.AST_FUNCTION);
n.setName( "geq");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_RELATIONAL_GEQ );
n.setType(libsbml.AST_FUNCTION);
n.setName( "gt");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_RELATIONAL_GT );
n.setType(libsbml.AST_FUNCTION);
n.setName( "leq");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_RELATIONAL_LEQ );
n.setType(libsbml.AST_FUNCTION);
n.setName( "lt");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_RELATIONAL_LT );
n.setType(libsbml.AST_FUNCTION);
n.setName( "neq");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_RELATIONAL_NEQ );
n.setType(libsbml.AST_FUNCTION);
n = null;
}
public void test_ASTNode_canonicalizeFunctionsL1()
{
ASTNode n = new ASTNode(libsbml.AST_FUNCTION);
ASTNode c;
n.setName( "acos");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCCOS );
n.setType(libsbml.AST_FUNCTION);
n.setName( "asin");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCSIN );
n.setType(libsbml.AST_FUNCTION);
n.setName( "atan");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCTAN );
n.setType(libsbml.AST_FUNCTION);
n.setName( "ceil");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_CEILING );
n.setType(libsbml.AST_FUNCTION);
n.setName( "pow");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_POWER );
n = null;
n = new ASTNode(libsbml.AST_FUNCTION);
n.setName( "log");
c = new ASTNode();
c.setName( "x");
n.addChild(c);
assertTrue( n.getType() == libsbml.AST_FUNCTION );
assertTrue( n.getNumChildren() == 1 );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_LN );
assertTrue( n.getNumChildren() == 1 );
n.setType(libsbml.AST_FUNCTION);
c = new ASTNode();
c.setName( "y");
n.addChild(c);
assertTrue( n.getType() == libsbml.AST_FUNCTION );
assertTrue( n.getNumChildren() == 2 );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_LOG );
n = null;
n = new ASTNode(libsbml.AST_FUNCTION);
n.setName( "log10");
c = new ASTNode();
c.setName( "x");
n.addChild(c);
assertTrue( n.getType() == libsbml.AST_FUNCTION );
assertTrue( n.getNumChildren() == 1 );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_LOG );
assertTrue( n.getNumChildren() == 2 );
c = n.getLeftChild();
assertTrue( c.getType() == libsbml.AST_INTEGER );
assertTrue( c.getInteger() == 10 );
c = n.getRightChild();
assertTrue( c.getType() == libsbml.AST_NAME );
assertTrue(( "x" == c.getName() ));
n = null;
n = new ASTNode(libsbml.AST_FUNCTION);
n.setName( "sqr");
c = new ASTNode();
c.setName( "x");
n.addChild(c);
assertTrue( n.getType() == libsbml.AST_FUNCTION );
assertTrue( n.getNumChildren() == 1 );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_POWER );
assertTrue( n.getNumChildren() == 2 );
c = n.getLeftChild();
assertTrue( c.getType() == libsbml.AST_NAME );
assertTrue(( "x" == c.getName() ));
c = n.getRightChild();
assertTrue( c.getType() == libsbml.AST_INTEGER );
assertTrue( c.getInteger() == 2 );
n = null;
n = new ASTNode(libsbml.AST_FUNCTION);
n.setName( "sqrt");
c = new ASTNode();
c.setName( "x");
n.addChild(c);
assertTrue( n.getType() == libsbml.AST_FUNCTION );
assertTrue( n.getNumChildren() == 1 );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ROOT );
assertTrue( n.getNumChildren() == 2 );
c = n.getLeftChild();
assertTrue( c.getType() == libsbml.AST_INTEGER );
assertTrue( c.getInteger() == 2 );
c = n.getRightChild();
assertTrue( c.getType() == libsbml.AST_NAME );
assertTrue(( "x" == c.getName() ));
n = null;
}
public void test_ASTNode_canonicalizeFunctions()
{
ASTNode n = new ASTNode(libsbml.AST_FUNCTION);
n.setName( "abs");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ABS );
n.setType(libsbml.AST_FUNCTION);
n.setName( "arccos");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCCOS );
n.setType(libsbml.AST_FUNCTION);
n.setName( "arccosh");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCCOSH );
n.setType(libsbml.AST_FUNCTION);
n.setName( "arccot");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCCOT );
n.setType(libsbml.AST_FUNCTION);
n.setName( "arccoth");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCCOTH );
n.setType(libsbml.AST_FUNCTION);
n.setName( "arccsc");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCCSC );
n.setType(libsbml.AST_FUNCTION);
n.setName( "arccsch");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCCSCH );
n.setType(libsbml.AST_FUNCTION);
n.setName( "arcsec");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCSEC );
n.setType(libsbml.AST_FUNCTION);
n.setName( "arcsech");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCSECH );
n.setType(libsbml.AST_FUNCTION);
n.setName( "arcsin");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCSIN );
n.setType(libsbml.AST_FUNCTION);
n.setName( "arcsinh");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCSINH );
n.setType(libsbml.AST_FUNCTION);
n.setName( "arctan");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCTAN );
n.setType(libsbml.AST_FUNCTION);
n.setName( "arctanh");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCTANH );
n.setType(libsbml.AST_FUNCTION);
n.setName( "ceiling");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_CEILING );
n.setType(libsbml.AST_FUNCTION);
n.setName( "cos");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_COS );
n.setType(libsbml.AST_FUNCTION);
n.setName( "cosh");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_COSH );
n.setType(libsbml.AST_FUNCTION);
n.setName( "cot");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_COT );
n.setType(libsbml.AST_FUNCTION);
n.setName( "coth");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_COTH );
n.setType(libsbml.AST_FUNCTION);
n.setName( "csc");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_CSC );
n.setType(libsbml.AST_FUNCTION);
n.setName( "csch");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_CSCH );
n.setType(libsbml.AST_FUNCTION);
n.setName( "exp");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_EXP );
n.setType(libsbml.AST_FUNCTION);
n.setName( "factorial");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_FACTORIAL );
n.setType(libsbml.AST_FUNCTION);
n.setName( "floor");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_FLOOR );
n.setType(libsbml.AST_FUNCTION);
n.setName( "lambda");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_LAMBDA );
n.setType(libsbml.AST_FUNCTION);
n.setName( "ln");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_LN );
n.setType(libsbml.AST_FUNCTION);
n.setName( "log");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_LOG );
n.setType(libsbml.AST_FUNCTION);
n.setName( "piecewise");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_PIECEWISE );
n.setType(libsbml.AST_FUNCTION);
n.setName( "power");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_POWER );
n.setType(libsbml.AST_FUNCTION);
n.setName( "root");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ROOT );
n.setType(libsbml.AST_FUNCTION);
n.setName( "sec");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_SEC );
n.setType(libsbml.AST_FUNCTION);
n.setName( "sech");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_SECH );
n.setType(libsbml.AST_FUNCTION);
n.setName( "sin");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_SIN );
n.setType(libsbml.AST_FUNCTION);
n.setName( "sinh");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_SINH );
n.setType(libsbml.AST_FUNCTION);
n.setName( "tan");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_TAN );
n.setType(libsbml.AST_FUNCTION);
n.setName( "tanh");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_TANH );
n.setType(libsbml.AST_FUNCTION);
n.setName( "Foo");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n = null;
}
public void test_ASTNode_setType()
{
ASTNode node = new ASTNode();
node.setName( "foo");
assertTrue( node.getType() == libsbml.AST_NAME );
node.setType(libsbml.AST_FUNCTION);
assertTrue( node.getType() == libsbml.AST_FUNCTION );
assertTrue(( "foo" == node.getName() ));
node.setType(libsbml.AST_NAME);
assertTrue( node.getType() == libsbml.AST_NAME );
assertTrue(( "foo" == node.getName() ));
node.setType(libsbml.AST_INTEGER);
assertTrue( node.getType() == libsbml.AST_INTEGER );
node.setType(libsbml.AST_REAL);
assertTrue( node.getType() == libsbml.AST_REAL );
node.setType(libsbml.AST_UNKNOWN);
assertTrue( node.getType() == libsbml.AST_UNKNOWN );
node.setType(libsbml.AST_PLUS);
assertTrue( node.getType() == libsbml.AST_PLUS );
assertTrue( node.getCharacter() == '+' );
node.setType(libsbml.AST_MINUS);
assertTrue( node.getType() == libsbml.AST_MINUS );
assertTrue( node.getCharacter() == '-' );
node.setType(libsbml.AST_TIMES);
assertTrue( node.getType() == libsbml.AST_TIMES );
assertTrue( node.getCharacter() == '*' );
node.setType(libsbml.AST_DIVIDE);
assertTrue( node.getType() == libsbml.AST_DIVIDE );
assertTrue( node.getCharacter() == '/' );
node.setType(libsbml.AST_POWER);
assertTrue( node.getType() == libsbml.AST_POWER );
assertTrue( node.getCharacter() == '^' );
node = null;
}
public void test_element_ci_definitionURL()
{
string s = wrapMathML("<ci definitionURL=\"foobar\"> x </ci>");
N = libsbml.readMathMLFromString(s);
assertTrue( N != null );
assertTrue( N.getType() == libsbml.AST_NAME );
assertTrue(( "x" == N.getName() ));
assertTrue( N.getNumChildren() == 0 );
assertTrue( N.getDefinitionURL().getValue(0) == "foobar" );
}
public void test_ASTNode_deepCopy_2()
{
ASTNode node = new ASTNode();
ASTNode copy;
node.setName( "Foo");
assertTrue( node.getType() == libsbml.AST_NAME );
assertTrue(( "Foo" == node.getName() ));
assertTrue( node.getNumChildren() == 0 );
copy = node.deepCopy();
assertTrue( copy != node );
assertTrue( copy.getType() == libsbml.AST_NAME );
assertTrue(( "Foo" == copy.getName() ));
assertTrue( copy.getNumChildren() == 0 );
node = null;
copy = null;
}
public void test_element_ci_surrounding_spaces_bug()
{
string s = wrapMathML(" <ci> s </ci> ");
N = libsbml.readMathMLFromString(s);
assertTrue( N != null );
assertTrue( N.getType() == libsbml.AST_NAME );
assertTrue(( "s" == N.getName() ));
assertTrue( N.getNumChildren() == 0 );
}
public void test_ASTNode_deepCopy_4()
{
ASTNode node = new ASTNode(libsbml.AST_FUNCTION_ABS);
ASTNode copy;
node.setName( "ABS");
assertTrue( node.getType() == libsbml.AST_FUNCTION_ABS );
assertTrue(( "ABS" == node.getName() ));
assertTrue( node.getNumChildren() == 0 );
copy = node.deepCopy();
assertTrue( copy != node );
assertTrue( copy.getType() == libsbml.AST_FUNCTION_ABS );
assertTrue(( "ABS" == copy.getName() ));
assertTrue( copy.getNumChildren() == 0 );
node = null;
copy = null;
}
public void test_element_cn_integer()
{
string s = wrapMathML("<cn type='integer'> 12345 </cn>");
N = libsbml.readMathMLFromString(s);
assertTrue( N != null );
assertTrue( N.getType() == libsbml.AST_INTEGER );
assertTrue( N.getInteger() == 12345 );
assertTrue( N.getNumChildren() == 0 );
}
public void test_ASTNode_setCharacter()
{
ASTNode node = new ASTNode();
node.setName( "foo");
assertTrue( node.getType() == libsbml.AST_NAME );
assertTrue( node.getCharacter() == '\0' );
assertTrue(( "foo" == node.getName() ));
assertTrue( node.getInteger() == 0 );
assertTrue( node.getReal() == 0 );
assertTrue( node.getExponent() == 0 );
assertTrue( node.getDenominator() == 1 );
node.setCharacter( '+');
assertTrue( node.getType() == libsbml.AST_PLUS );
assertTrue( node.getCharacter() == '+' );
assertTrue( node.getName() == null );
assertTrue( node.getInteger() == 0 );
assertTrue( node.getReal() == 0 );
assertTrue( node.getExponent() == 0 );
assertTrue( node.getDenominator() == 1 );
node.setCharacter( '-');
assertTrue( node.getType() == libsbml.AST_MINUS );
assertTrue( node.getCharacter() == '-' );
assertTrue( node.getName() == null );
assertTrue( node.getInteger() == 0 );
assertTrue( node.getReal() == 0 );
assertTrue( node.getExponent() == 0 );
assertTrue( node.getDenominator() == 1 );
node.setCharacter( '*');
assertTrue( node.getType() == libsbml.AST_TIMES );
assertTrue( node.getCharacter() == '*' );
assertTrue( node.getName() == null );
assertTrue( node.getInteger() == 0 );
assertTrue( node.getReal() == 0 );
assertTrue( node.getExponent() == 0 );
assertTrue( node.getDenominator() == 1 );
node.setCharacter( '/');
assertTrue( node.getType() == libsbml.AST_DIVIDE );
assertTrue( node.getCharacter() == '/' );
assertTrue( node.getName() == null );
assertTrue( node.getInteger() == 0 );
assertTrue( node.getReal() == 0 );
assertTrue( node.getExponent() == 0 );
assertTrue( node.getDenominator() == 1 );
node.setCharacter( '^');
assertTrue( node.getType() == libsbml.AST_POWER );
assertTrue( node.getCharacter() == '^' );
assertTrue( node.getName() == null );
assertTrue( node.getInteger() == 0 );
assertTrue( node.getReal() == 0 );
assertTrue( node.getExponent() == 0 );
assertTrue( node.getDenominator() == 1 );
node.setCharacter( '$');
assertTrue( node.getType() == libsbml.AST_UNKNOWN );
assertTrue( node.getCharacter() == '$' );
assertTrue( node.getName() == null );
assertTrue( node.getInteger() == 0 );
assertTrue( node.getReal() == 0 );
assertTrue( node.getExponent() == 0 );
assertTrue( node.getDenominator() == 1 );
node = null;
}
public void test_element_cn_real()
{
string s = wrapMathML("<cn type='real'> 12345.7 </cn>");
N = libsbml.readMathMLFromString(s);
assertTrue( N != null );
assertTrue( N.getType() == libsbml.AST_REAL );
assertTrue( N.getReal() == 12345.7 );
assertTrue( N.getNumChildren() == 0 );
}
public void test_element_bug_apply_ci_1()
{
string s = wrapMathML("<apply>" +
" <ci> Y </ci>" +
" <cn> 1 </cn>" +
"</apply>");
N = libsbml.readMathMLFromString(s);
assertTrue( N != null );
assertTrue( N.getType() == libsbml.AST_FUNCTION );
assertTrue(( "Y" == N.getName() ));
assertTrue( N.getNumChildren() == 1 );
ASTNode c = N.getLeftChild();
assertTrue( c != null );
assertTrue( c.getType() == libsbml.AST_REAL );
assertTrue( c.getReal() == 1 );
assertTrue( c.getNumChildren() == 0 );
}
public void test_element_constants_infinity()
{
string s = wrapMathML("<infinity/>");
N = libsbml.readMathMLFromString(s);
assertTrue( N != null );
assertTrue( N.getType() == libsbml.AST_REAL );
assertTrue( util_isInf(N.getReal()) == true );
assertTrue( N.getNumChildren() == 0 );
}
public void test_element_bug_apply_ci_2()
{
string s = wrapMathML("<apply>" +
" <ci> Y </ci>" +
" <csymbol encoding='text' " +
" definitionURL='http://www.sbml.org/sbml/symbols/time'> t </csymbol>" +
"</apply>");
N = libsbml.readMathMLFromString(s);
assertTrue( N != null );
assertTrue( N.getType() == libsbml.AST_FUNCTION );
assertTrue(( "Y" == N.getName() ));
assertTrue( N.getNumChildren() == 1 );
ASTNode c = N.getLeftChild();
assertTrue( c != null );
assertTrue( c.getType() == libsbml.AST_NAME_TIME );
assertTrue(( "t" == c.getName() ));
assertTrue( c.getNumChildren() == 0 );
}
public void test_element_constants_true()
{
string s = wrapMathML("<true/>");
N = libsbml.readMathMLFromString(s);
assertTrue( N != null );
assertTrue( N.getType() == libsbml.AST_CONSTANT_TRUE );
assertTrue( N.getNumChildren() == 0 );
}
public void test_element_bug_csymbol_1()
{
string s = wrapMathML("<apply>" +
" <gt/>" +
" <csymbol encoding='text' " +
" definitionURL='http://www.sbml.org/sbml/symbols/time'>time</csymbol>" +
" <cn>5000</cn>" +
"</apply>");
N = libsbml.readMathMLFromString(s);
assertTrue( N != null );
assertTrue( N.getType() == libsbml.AST_RELATIONAL_GT );
assertTrue( N.getNumChildren() == 2 );
ASTNode c = N.getLeftChild();
assertTrue( c != null );
assertTrue( c.getType() == libsbml.AST_NAME_TIME );
assertTrue(( "time" == c.getName() ));
assertTrue( c.getNumChildren() == 0 );
c = N.getRightChild();
assertTrue( c != null );
assertTrue( c.getType() == libsbml.AST_REAL );
assertTrue( c.getReal() == 5000 );
assertTrue( c.getNumChildren() == 0 );
}
public void test_element_csymbol_time()
{
string s = wrapMathML("<csymbol encoding='text' " + "definitionURL='http://www.sbml.org/sbml/symbols/time'> t </csymbol>");
N = libsbml.readMathMLFromString(s);
assertTrue( N != null );
assertTrue( N.getType() == libsbml.AST_NAME_TIME );
assertTrue(( "t" == N.getName() ));
assertTrue( N.getNumChildren() == 0 );
}
public void test_element_bug_csymbol_delay_1()
{
string s = wrapMathML("<apply>" +
" <csymbol encoding='text' definitionURL='http://www.sbml.org/sbml/" +
"symbols/delay'> my_delay </csymbol>" +
" <ci> x </ci>" +
" <cn> 0.1 </cn>" +
"</apply>\n");
N = libsbml.readMathMLFromString(s);
assertTrue( N != null );
assertTrue( N.getType() == libsbml.AST_FUNCTION_DELAY );
assertTrue(( "my_delay" == N.getName() ));
assertTrue( N.getNumChildren() == 2 );
ASTNode c = N.getLeftChild();
assertTrue( c != null );
assertTrue( c.getType() == libsbml.AST_NAME );
assertTrue(( "x" == c.getName() ));
assertTrue( c.getNumChildren() == 0 );
c = N.getRightChild();
assertTrue( c != null );
assertTrue( c.getType() == libsbml.AST_REAL );
assertTrue( c.getReal() == 0.1 );
assertTrue( c.getNumChildren() == 0 );
}
public void test_ValidASTNode_setType()
{
ASTNode n = new ASTNode();
int i = n.setType(libsbml.AST_REAL);
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertTrue( n.getType() == libsbml.AST_REAL );
i = n.setType(libsbml.AST_PLUS);
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertTrue( n.getType() == libsbml.AST_PLUS );
assertTrue( n.getCharacter() == '+' );
i = n.setType(libsbml.AST_FUNCTION_ARCCOSH);
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCCOSH );
i = n.setType(libsbml.AST_UNKNOWN);
assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE );
assertTrue( n.getType() == libsbml.AST_UNKNOWN );
n = null;
}
public void test_ASTNode_setReal()
{
ASTNode node = new ASTNode();
node.setName( "foo");
assertTrue( node.getType() == libsbml.AST_NAME );
node.setValue(32.1);
assertTrue( node.getType() == libsbml.AST_REAL );
assertTrue( node.getInteger() == 0 );
assertTrue( node.getName() == null );
assertTrue( node.getCharacter() == '\0' );
assertTrue( node.getReal() == 32.1 );
assertTrue( node.getExponent() == 0 );
assertTrue( node.getDenominator() == 1 );
assertTrue( node.getMantissa() == 32.1 );
node.setValue(45,90);
assertTrue( node.getType() == libsbml.AST_RATIONAL );
assertTrue( node.getInteger() == 45 );
assertTrue( node.getName() == null );
assertTrue( node.getCharacter() == '\0' );
assertTrue( node.getReal() == 0.5 );
assertTrue( node.getExponent() == 0 );
assertTrue( node.getDenominator() == 90 );
assertTrue( node.getMantissa() == 0 );
node.setValue(32.0,4);
assertTrue( node.getType() == libsbml.AST_REAL_E );
assertTrue( node.getInteger() == 0 );
assertTrue( node.getName() == null );
assertTrue( node.getCharacter() == '\0' );
assertTrue( node.getReal() == 320000 );
assertTrue( node.getExponent() == 4 );
assertTrue( node.getDenominator() == 1 );
assertTrue( node.getMantissa() == 32 );
node = null;
}
