public void test_AssignmentRule_parent_create()
{
Model m = new Model(2,4);
AssignmentRule r = m.createAssignmentRule();
ListOf lo = m.getListOfRules();
assertTrue( lo == m.getRule(0).getParentSBMLObject() );
assertTrue( lo == r.getParentSBMLObject() );
assertTrue( m == lo.getParentSBMLObject() );
}
public void test_AssignmentRule_ancestor_create()
{
Model m = new Model(2,4);
AssignmentRule r = m.createAssignmentRule();
ListOf lo = m.getListOfRules();
assertTrue( r.getAncestorOfType(libsbml.SBML_MODEL) == m );
assertTrue( r.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
assertTrue( r.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
assertTrue( r.getAncestorOfType(libsbml.SBML_EVENT) == null );
Rule obj = m.getRule(0);
assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m );
assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null );
}
/// <summary>
/// [ RuleStruct ]
/// [[ RuleType, Formula, Variable ]]
/// </summary>
/// <param name="aSBMLmodel"></param>
/// <returns></returns>
public static List<RuleStruct> getRule(Model aSBMLmodel)
{
List<RuleStruct> list = new List<RuleStruct>();
ListOfRules rules = aSBMLmodel.getListOfRules();
for (int i = 0; i < rules.size(); i++ )
{
Rule aRule = aSBMLmodel.getRule(i);
int aRuleType = aRule.getTypeCode();
string aFormula = aRule.getFormula();
string aVariable = null;
if ( aRuleType == libsbml.libsbml.SBML_ALGEBRAIC_RULE )
aVariable = "";
else if (aRuleType == libsbml.libsbml.SBML_ASSIGNMENT_RULE ||
aRuleType == libsbml.libsbml.SBML_RATE_RULE)
aVariable = aRule.getVariable();
//else if (aRuleType == libsbml.libsbml.SBML_SPECIES_CONCENTRATION_RULE)
// aVariable = aRule.getSpecies();
//else if (aRuleType == libsbml.libsbml.SBML_COMPARTMENT_VOLUME_RULE)
// aVariable = aRule.getCompartment();
// ToDo: LibSBML3.2C#で呼び出せない。どうするか検討する。
else if (aRuleType == libsbml.libsbml.SBML_PARAMETER_RULE)
aVariable = aRule.getName();
else
throw new EcellException(" The type of Rule must be Algebraic, Assignment or Rate Rule");
RuleStruct rule = new RuleStruct(
aRuleType,
aFormula,
aVariable );
list.Add(rule);
}
return list;
}
public void test_Rule_parent_add()
{
Rule ia = new RateRule(2,4);
ia.setVariable("a");
ia.setMath(libsbml.parseFormula("9"));
Model m = new Model(2,4);
m.addRule(ia);
ia = null;
ListOf lo = m.getListOfRules();
assertTrue( lo == m.getRule(0).getParentSBMLObject() );
assertTrue( m == lo.getParentSBMLObject() );
}
public void test_Rule_ancestor_add()
{
Rule ia = new RateRule(2,4);
ia.setVariable("a");
ia.setMath(libsbml.parseFormula("9"));
Model m = new Model(2,4);
m.addRule(ia);
ia = null;
ListOf lo = m.getListOfRules();
Rule obj = m.getRule(0);
assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m );
assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null );
}
public void test_ReadSBML_metaid_ListOf()
{
SBase sb;
string s = wrapSBML_L2v1("<listOfFunctionDefinitions metaid='lofd'/>" +
"<listOfUnitDefinitions metaid='loud'/>" +
"<listOfCompartments metaid='loc'/>" +
"<listOfSpecies metaid='los'/>" +
"<listOfParameters metaid='lop'/>" +
"<listOfRules metaid='lor'/>" +
"<listOfReactions metaid='lorx'/>" +
"<listOfEvents metaid='loe'/>");
D = libsbml.readSBMLFromString(s);
M = D.getModel();
assertTrue( M != null );
sb = M.getListOfFunctionDefinitions();
assertEquals( true, sb.isSetMetaId() );
assertTrue(( "lofd" == sb.getMetaId() ));
sb = M.getListOfUnitDefinitions();
assertEquals( true, sb.isSetMetaId() );
assertTrue(( "loud" == sb.getMetaId() ));
sb = M.getListOfCompartments();
assertEquals( true, sb.isSetMetaId() );
assertTrue(( "loc" == sb.getMetaId() ));
sb = M.getListOfSpecies();
assertEquals( true, sb.isSetMetaId() );
assertTrue(( "los" == sb.getMetaId() ));
sb = M.getListOfParameters();
assertEquals( true, sb.isSetMetaId() );
assertTrue(( "lop" == sb.getMetaId() ));
sb = M.getListOfRules();
assertEquals( true, sb.isSetMetaId() );
assertTrue(( "lor" == sb.getMetaId() ));
sb = M.getListOfReactions();
assertEquals( true, sb.isSetMetaId() );
assertTrue(( "lorx" == sb.getMetaId() ));
sb = M.getListOfEvents();
assertEquals( true, sb.isSetMetaId() );
assertTrue(( "loe" == sb.getMetaId() ));
}