| public static toUtcFromRdv ( string rdvTS ) : string | ||
| rdvTS | string | |
| return | string | |
internal VitalSignSet[] toVitalSignsFromRdv(string response)
{
if (response == "")
{
return(null);
}
string[] lines = StringUtils.split(response, StringUtils.CRLF);
lines = StringUtils.trimArray(lines);
ArrayList lst = new ArrayList();
VitalSignSet rec = null;
VitalSign s = null;
for (int i = 0; i < lines.Length; i++)
{
string[] flds = StringUtils.split(lines[i], StringUtils.CARET);
int fldnum = Convert.ToInt16(flds[0]);
switch (fldnum)
{
case 1:
if (rec != null)
{
lst.Add(rec);
}
rec = new VitalSignSet();
string[] subflds = StringUtils.split(flds[1], StringUtils.SEMICOLON);
if (subflds.Length == 1)
{
rec.Facility = new SiteId("200", subflds[0]);
}
else
{
rec.Facility = new SiteId(subflds[1], subflds[0]);
}
break;
case 2:
if (flds.Length == 2)
{
rec.Timestamp = VistaTimestamp.toUtcFromRdv(flds[1]);
}
break;
case 3:
s = new VitalSign();
s.Type = new ObservationType("", VitalSign.VITAL_SIGN, VitalSign.TEMPERATURE);
if (flds.Length == 2)
{
s.Value1 = flds[1];
}
rec.addVitalSign(VitalSign.TEMPERATURE, s);
break;
case 4:
s = new VitalSign();
s.Type = new ObservationType("", VitalSign.VITAL_SIGN, VitalSign.PULSE);
if (flds.Length == 2)
{
s.Value1 = flds[1];
}
rec.addVitalSign(VitalSign.PULSE, s);
break;
case 5:
s = new VitalSign();
s.Type = new ObservationType("", VitalSign.VITAL_SIGN, VitalSign.RESPIRATION);
if (flds.Length == 2)
{
s.Value1 = flds[1];
}
rec.addVitalSign(VitalSign.RESPIRATION, s);
break;
case 6:
s = new VitalSign();
s.Type = new ObservationType("", VitalSign.VITAL_SIGN, VitalSign.BLOOD_PRESSURE);
if (flds.Length == 2)
{
s.Value1 = flds[1];
}
rec.addVitalSign(VitalSign.BLOOD_PRESSURE, s);
break;
case 7:
s = new VitalSign();
s.Type = new ObservationType("", VitalSign.VITAL_SIGN, VitalSign.HEIGHT);
if (flds.Length == 2)
{
s.Value1 = flds[1];
}
rec.addVitalSign(VitalSign.HEIGHT, s);
break;
case 8:
s = new VitalSign();
s.Type = new ObservationType("", VitalSign.VITAL_SIGN, VitalSign.WEIGHT);
if (flds.Length == 2)
{
s.Value1 = flds[1];
}
rec.addVitalSign(VitalSign.WEIGHT, s);
break;
case 9:
s = new VitalSign();
s.Type = new ObservationType("", VitalSign.VITAL_SIGN, VitalSign.PAIN);
if (flds.Length == 2)
{
s.Value1 = flds[1];
}
rec.addVitalSign(VitalSign.PAIN, s);
break;
case 10:
s = new VitalSign();
s.Type = new ObservationType("", VitalSign.VITAL_SIGN, VitalSign.PULSE_OXYMETRY);
if (flds.Length == 2)
{
s.Value1 = flds[1];
}
rec.addVitalSign(VitalSign.PULSE_OXYMETRY, s);
break;
case 11:
s = new VitalSign();
s.Type = new ObservationType("", VitalSign.VITAL_SIGN, VitalSign.CENTRAL_VENOUS_PRESSURE);
if (flds.Length == 2)
{
s.Value1 = flds[1];
}
rec.addVitalSign(VitalSign.CENTRAL_VENOUS_PRESSURE, s);
break;
case 12:
s = new VitalSign();
s.Type = new ObservationType("", VitalSign.VITAL_SIGN, VitalSign.CIRCUMFERENCE_GIRTH);
if (flds.Length == 2)
{
s.Value1 = flds[1];
}
rec.addVitalSign(VitalSign.CIRCUMFERENCE_GIRTH, s);
break;
case 15:
if (flds.Length == 2)
{
setVitalSignQualifierStrings(rec, flds[1], "Qualifiers");
rec.Qualifiers = flds[1];
}
break;
case 16:
s = new VitalSign();
s.Type = new ObservationType("", VitalSign.VITAL_SIGN, VitalSign.BODY_MASS_INDEX);
if (flds.Length == 2)
{
s.Value1 = flds[1];
}
rec.addVitalSign(VitalSign.BODY_MASS_INDEX, s);
break;
case 17:
if (flds.Length == 2)
{
setVitalSignQualifierStrings(rec, flds[1], "Units");
rec.Units = flds[1];
}
break;
default:
break;
}
}
lst.Add(rec);
return((VitalSignSet[])lst.ToArray(typeof(VitalSignSet)));
}
internal RadiologyReport[] toRadiologyReports(string response)
{
if (response == "")
{
return(null);
}
string[] lines = StringUtils.split(response, StringUtils.CRLF);
ArrayList lst = new ArrayList();
RadiologyReport rec = null;
for (int i = 0; i < lines.Length; i++)
{
if (lines[i] == "")
{
continue;
}
string[] flds = StringUtils.split(lines[i], StringUtils.CARET);
if (flds[1] == "[+]")
{
lst.Add(rec);
continue;
}
int fldnum = Convert.ToInt32(flds[0]);
switch (fldnum)
{
// TODO
// need to consider the following case:
//1^NH CAMP PENDLETON;NH CAMP PENDLETON <--- not a recognized site code, should add to site 200
//2^05/24/2010 12:26
//3^L-SPINE, SERIES (3)
// lots more stuff in between
//10^[+]
case 1:
//if (rec != null)
//{
// lst.Add(rec);
//}
rec = new RadiologyReport();
string[] parts = StringUtils.split(flds[1], StringUtils.SEMICOLON);
if (parts.Length == 2)
{
rec.Facility = new SiteId(parts[1], parts[0]);
}
else if (flds[1] != "")
{
rec.Facility = new SiteId(cxn.DataSource.SiteId.Id, flds[1]);
}
else
{
rec.Facility = cxn.DataSource.SiteId;
}
break;
case 2:
if (flds.Length == 2)
{
rec.Timestamp = VistaTimestamp.toUtcFromRdv(flds[1]);
}
break;
case 3:
if (flds.Length == 2)
{
rec.Title = flds[1];
}
break;
case 4:
if (flds.Length == 2)
{
rec.Status = flds[1];
}
break;
case 5:
if (flds.Length == 2)
{
rec.CaseNumber = flds[1];
rec.AccessionNumber = rec.getAccessionNumber(rec.Timestamp, rec.CaseNumber, DateFormat.ISO);
}
break;
case 6:
if (flds.Length == 2)
{
rec.Text += flds[1] + '\n';
}
break;
//case 7:
// if (flds.Length == 2)
// {
// rec.Impression += flds[1] + '\n';
// }
// break;
//case 8:
// if (flds.Length == 2)
// {
// rec.Text += flds[1] + '\n';
// }
// break;
}
}
//if (rec != null)
//{
// lst.Add(rec);
//}
return((RadiologyReport[])lst.ToArray(typeof(RadiologyReport)));
}
internal CytologyReport[] toCytologyReports(string response)
{
if (response == "")
{
return(null);
}
ArrayList lst = new ArrayList();
string[] lines = StringUtils.split(response, StringUtils.CRLF);
lines = StringUtils.trimArray(lines);
CytologyReport rpt = null;
string collectionDate = "";
string specimenDesc = "";
string accessionNum = "";
for (int i = 0; i < lines.Length; i++)
{
string[] flds = StringUtils.split(lines[i], StringUtils.CARET);
int fldnum = Convert.ToInt32(flds[0]);
switch (fldnum)
{
case 1:
if (rpt != null)
{
rpt.Specimen = new LabSpecimen("", specimenDesc.Substring(0, specimenDesc.Length - 1), collectionDate, "");
rpt.Specimen.AccessionNumber = accessionNum;
lst.Add(rpt);
}
rpt = new CytologyReport();
rpt.Title = "Cytopathology Report";
specimenDesc = "";
if (flds.Length == 2)
{
string[] parts = StringUtils.split(flds[1], StringUtils.SEMICOLON);
if (parts.Length == 2)
{
rpt.Facility = new SiteId(parts[0], parts[1]);
}
else if (flds[1] != "")
{
rpt.Facility = new SiteId(cxn.DataSource.SiteId.Id, flds[1]);
}
else
{
rpt.Facility = cxn.DataSource.SiteId;
}
}
break;
case 2:
if (flds.Length == 2)
{
collectionDate = VistaTimestamp.toUtcFromRdv(flds[1]);
}
break;
case 3:
if (flds.Length == 2)
{
specimenDesc += flds[1] + '\n';
}
break;
case 4:
if (flds.Length == 2)
{
accessionNum = flds[1];
}
break;
case 5:
if (flds.Length == 2)
{
rpt.Exam += flds[1] + '\n';
}
break;
}
}
if (rpt != null)
{
rpt.Specimen = new LabSpecimen("", specimenDesc.Substring(0, specimenDesc.Length - 1), collectionDate, "");
rpt.Specimen.AccessionNumber = accessionNum;
lst.Add(rpt);
}
return((CytologyReport[])lst.ToArray(typeof(CytologyReport)));
}
internal ChemHemReport[] toChemHemReports(string response)
{
if (response == "")
{
return(null);
}
DictionaryHashList lst = new DictionaryHashList();
string[] lines = StringUtils.split(response, StringUtils.CRLF);
lines = StringUtils.trimArray(lines);
ChemHemReport rpt = null;
LabResult rslt = null;
string ts = "";
string facilityTag = "";
string facilityName = "";
for (int i = 0; i < lines.Length; i++)
{
string[] flds = StringUtils.split(lines[i], StringUtils.CARET);
if (!StringUtils.isNumeric(flds[0]))
{
throw new DataMisalignedException("Invalid fldnum: " + flds[0] + " in lines[" + i + "]");
}
int fldnum = Convert.ToInt32(flds[0]);
switch (fldnum)
{
case 1:
string[] parts = StringUtils.split(flds[1], StringUtils.SEMICOLON);
if (parts.Length == 2)
{
facilityTag = parts[1];
facilityName = parts[0];
}
else if (flds[1] != "")
{
facilityTag = cxn.DataSource.SiteId.Id;
facilityName = flds[1];
}
else
{
facilityTag = cxn.DataSource.SiteId.Id;
facilityName = cxn.DataSource.SiteId.Name;
}
break;
case 2:
if (rpt != null)
{
if (StringUtils.isEmpty(rslt.Test.RefRange))
{
if (!StringUtils.isEmpty(rslt.Test.LowRef) &&
!StringUtils.isEmpty(rslt.Test.HiRef))
{
rslt.Test.RefRange = rslt.Test.LowRef + " - " + rslt.Test.HiRef;
}
}
rpt.AddResult(rslt);
}
rslt = new LabResult();
rslt.Test = new LabTest();
ts = VistaTimestamp.toUtcFromRdv(flds[1]);
if (lst[ts] == null)
{
rpt = new ChemHemReport();
rpt.Facility = new SiteId(facilityTag, facilityName);
rpt.Timestamp = ts;
lst.Add(ts, rpt);
}
break;
case 3:
if (flds.Length == 2)
{
rslt.Test.Name = flds[1];
}
break;
case 4:
if (flds.Length == 2)
{
if (null != rslt)
{
rslt.SpecimenType = flds[1];
}
}
break;
case 5:
if (flds.Length == 2)
{
rslt.Value = flds[1];
}
break;
case 6:
if (flds.Length == 2)
{
rslt.BoundaryStatus = flds[1];
}
break;
case 7:
if (flds.Length == 2)
{
rslt.Test.Units = flds[1];
}
break;
case 8:
if (flds.Length == 2)
{
rslt.Test.LowRef = flds[1];
}
break;
case 9:
if (flds.Length == 2)
{
rslt.Test.HiRef = flds[1];
}
break;
case 10:
if (flds.Length == 2)
{
rslt.Comment += flds[1] + '\n';
}
break;
}
}
if (rpt != null)
{
if (StringUtils.isEmpty(rslt.Test.RefRange))
{
if (!StringUtils.isEmpty(rslt.Test.LowRef) &&
!StringUtils.isEmpty(rslt.Test.HiRef))
{
rslt.Test.RefRange = rslt.Test.LowRef + " - " + rslt.Test.HiRef;
}
}
rpt.AddResult(rslt);
}
ChemHemReport[] result = new ChemHemReport[lst.Count];
for (int i = 0; i < lst.Count; i++)
{
DictionaryEntry de = lst[i];
result[i] = (ChemHemReport)de.Value;
}
return(result);
}
internal AnatomicPathologyReport[] toAnatomicPathologyReports(string response)
{
if (response == "")
{
return(null);
}
ArrayList lst = new ArrayList();
string[] lines = StringUtils.split(response, StringUtils.CRLF);
lines = StringUtils.trimArray(lines);
AnatomicPathologyReport rpt = null;
for (int i = 0; i < lines.Length; i++)
{
string[] flds = StringUtils.split(lines[i], StringUtils.CARET);
int fldnum = Convert.ToInt32(flds[0]);
switch (fldnum)
{
case 1:
if (rpt != null)
{
lst.Add(rpt);
}
rpt = new AnatomicPathologyReport();
rpt.Title = "Anatomic Pathology Report";
if (flds.Length == 2)
{
string[] parts = StringUtils.split(flds[1], StringUtils.SEMICOLON);
if (parts.Length == 2)
{
rpt.Facility = new SiteId(parts[0], parts[1]);
}
else if (flds[1] != "")
{
rpt.Facility = new SiteId(cxn.DataSource.SiteId.Id, flds[1]);
}
else
{
rpt.Facility = cxn.DataSource.SiteId;
}
}
break;
case 2:
if (flds.Length == 2)
{
rpt.Timestamp = VistaTimestamp.toUtcFromRdv(flds[1]);
}
break;
case 3:
if (flds.Length == 2)
{
rpt.Specimen = new LabSpecimen("", flds[1], "", "");
}
break;
case 4: //[DP] 6/20/2011 Allow for the case with a null specimen.
if (flds.Length == 2 && rpt.Specimen != null)
{
rpt.Specimen.AccessionNumber = flds[1];
}
break;
case 5:
if (flds.Length == 2)
{
if (!String.IsNullOrEmpty(flds[1].TrimEnd()))
{
rpt.Exam += flds[1] + '\n';
}
}
break;
}
}
if (rpt != null)
{
lst.Add(rpt);
}
return((AnatomicPathologyReport[])lst.ToArray(typeof(AnatomicPathologyReport)));
}
internal ElectronMicroscopyReport[] toElectronMicroscopyReports(string response)
{
if (response == "")
{
return(null);
}
ArrayList lst = new ArrayList();
string[] lines = StringUtils.split(response, StringUtils.CRLF);
lines = StringUtils.trimArray(lines);
ElectronMicroscopyReport rpt = null;
string specimenName = "";
string exam = "";
string accessionNum = "";
for (int i = 0; i < lines.Length; i++)
{
string[] flds = StringUtils.split(lines[i], StringUtils.CARET);
int fldnum = Convert.ToInt32(flds[0]);
switch (fldnum)
{
case 1:
if (rpt != null)
{
if (!String.IsNullOrEmpty(specimenName))
{
specimenName = specimenName.Substring(0, specimenName.Length - 1);
rpt.Specimen = new LabSpecimen("", specimenName, "", accessionNum);
}
if (!String.IsNullOrEmpty(exam))
{
exam = exam.Substring(0, exam.Length - 1);
rpt.Exam = exam;
}
lst.Add(rpt);
}
rpt = new ElectronMicroscopyReport();
rpt.Title = "Electron Microscopy Report";
if (flds.Length == 2)
{
string[] parts = StringUtils.split(flds[1], StringUtils.SEMICOLON);
if (parts.Length == 2)
{
rpt.Facility = new SiteId(parts[0], parts[1]);
}
else if (flds[1] != "")
{
rpt.Facility = new SiteId(cxn.DataSource.SiteId.Id, flds[1]);
}
else
{
rpt.Facility = cxn.DataSource.SiteId;
}
}
break;
case 2:
if (flds.Length == 2)
{
rpt.Timestamp = VistaTimestamp.toUtcFromRdv(flds[1]);
}
break;
case 3:
if (flds.Length == 2)
{
specimenName += flds[1] + '\n';
}
break;
case 4:
if (flds.Length == 2)
{
accessionNum = flds[1];
}
break;
case 5:
if (flds.Length == 2)
{
if (!String.IsNullOrEmpty(flds[1].TrimEnd()))
{
exam += flds[1] + '\n';
}
}
break;
}
}
if (rpt != null)
{
if (!String.IsNullOrEmpty(specimenName))
{
specimenName = specimenName.Substring(0, specimenName.Length - 1);
rpt.Specimen = new LabSpecimen("", specimenName, "", accessionNum);
}
if (!String.IsNullOrEmpty(exam))
{
exam = exam.Substring(0, exam.Length - 1);
rpt.Exam = exam;
}
lst.Add(rpt);
}
return((ElectronMicroscopyReport[])lst.ToArray(typeof(ElectronMicroscopyReport)));
}
internal MicrobiologyReport[] toMicrobiologyReports(string response)
{
if (response == "")
{
return(null);
}
ArrayList lst = new ArrayList();
string[] lines = StringUtils.split(response, StringUtils.CRLF);
lines = StringUtils.trimArray(lines);
MicrobiologyReport rpt = null;
for (int i = 0; i < lines.Length; i++)
{
string[] flds = StringUtils.split(lines[i], StringUtils.CARET);
int fldnum = Convert.ToInt32(flds[0]);
switch (fldnum)
{
case 1:
if (rpt != null)
{
if (!String.IsNullOrEmpty(rpt.Sample))
{
rpt.Sample = rpt.Sample.Substring(0, rpt.Sample.Length - 1);
}
lst.Add(rpt);
}
rpt = new MicrobiologyReport();
rpt.Title = "Microbiology Report";
if (flds.Length == 2)
{
string[] parts = StringUtils.split(flds[1], StringUtils.SEMICOLON);
if (parts.Length == 2)
{
rpt.Facility = new SiteId(parts[1], parts[0]);
}
else if (flds[1] != "")
{
rpt.Facility = new SiteId(cxn.DataSource.SiteId.Id, flds[1]);
}
else
{
rpt.Facility = cxn.DataSource.SiteId;
}
}
break;
case 2:
if (flds.Length == 2)
{
rpt.Timestamp = VistaTimestamp.toUtcFromRdv(flds[1]);
}
break;
case 3:
if (flds.Length == 2)
{
rpt.Title = flds[1];
}
break;
case 4:
if (flds.Length == 2)
{
rpt.Sample += flds[1] + '\n';
}
break;
case 5:
if (flds.Length == 2)
{
rpt.Specimen = new LabSpecimen("", flds[1], "", "");
}
break;
case 6:
if (flds.Length == 2)
{
rpt.Specimen.AccessionNumber = flds[1];
}
break;
case 7:
if (flds.Length == 2)
{
rpt.Text += flds[1] + '\n';
}
break;
}
}
if (rpt != null)
{
lst.Add(rpt);
}
return((MicrobiologyReport[])lst.ToArray(typeof(MicrobiologyReport)));
}
internal SurgicalPathologyReport[] toSurgicalPathologyReports(string response)
{
if (response == "")
{
return(null);
}
ArrayList lst = new ArrayList();
string[] lines = StringUtils.split(response, StringUtils.CRLF);
lines = StringUtils.trimArray(lines);
SurgicalPathologyReport rpt = null;
string specimenName = "";
string exam = "";
string accessionNum = "";
IList <SurgicalPathologyReport> rpts = new List <SurgicalPathologyReport>();
SurgicalPathologyReport newRpt = new SurgicalPathologyReport();
for (int i = 0; i < lines.Length; i++)
{
string[] flds = StringUtils.split(lines[i], StringUtils.CARET);
int fldnum = Convert.ToInt32(flds[0]);
switch (fldnum)
{
case 1:
newRpt.Title = "Surgical Pathology Report";
if (rpt != null)
{
if (!String.IsNullOrEmpty(specimenName))
{
specimenName = specimenName.Substring(0, specimenName.Length - 1);
rpt.Specimen = new LabSpecimen("", specimenName, "", accessionNum);
}
if (!String.IsNullOrEmpty(exam))
{
exam = exam.Substring(0, exam.Length - 1);
rpt.Exam = exam;
}
lst.Add(rpt);
}
rpt = new SurgicalPathologyReport();
rpt.Title = "Surgical Pathology Report";
if (flds.Length == 2)
{
string[] parts = StringUtils.split(flds[1], StringUtils.SEMICOLON);
if (parts.Length == 2)
{
newRpt.Facility = new SiteId(parts[0], parts[1]);
rpt.Facility = new SiteId(parts[0], parts[1]);
}
else if (flds[1] != "")
{
newRpt.Facility = new SiteId(cxn.DataSource.SiteId.Id, parts[1]);
rpt.Facility = new SiteId(cxn.DataSource.SiteId.Id, flds[1]);
}
else
{
newRpt.Facility = cxn.DataSource.SiteId;
rpt.Facility = cxn.DataSource.SiteId;
}
}
break;
case 2:
if (flds.Length == 2)
{
newRpt.Timestamp = VistaTimestamp.toUtcFromRdv(flds[1]);
rpt.Timestamp = VistaTimestamp.toUtcFromRdv(flds[1]);
}
break;
case 3:
if (flds.Length == 2)
{
if (newRpt.Specimen == null)
{
newRpt.Specimen = new LabSpecimen("", "", "", "");
}
newRpt.Specimen.Name += flds[1] + '\n';
specimenName += flds[1] + '\n';
}
break;
case 4:
if (flds.Length == 2)
{
if (newRpt.Specimen == null)
{
newRpt.Specimen = new LabSpecimen("", "", "", "");
}
newRpt.Specimen.AccessionNumber = flds[1];
accessionNum = flds[1];
}
break;
case 5:
if (flds.Length == 2)
{
if (!String.IsNullOrEmpty(flds[1].TrimEnd()))
{
newRpt.Exam += flds[1] + '\n';
exam += flds[1] + '\n';
}
}
break;
case 6:
if (newRpt.Specimen != null && !String.IsNullOrEmpty(newRpt.Specimen.Name))
{
newRpt.Specimen.Name = newRpt.Specimen.Name.TrimEnd(new char[] { '\n' });
}
if (!String.IsNullOrEmpty(newRpt.Exam))
{
newRpt.Exam = newRpt.Exam.TrimEnd(new char[] { '\n' });
}
rpts.Add(newRpt);
newRpt = new SurgicalPathologyReport();
break;
}
}
if (rpt != null)
{
lst.Add(rpt);
}
SurgicalPathologyReport[] result = new SurgicalPathologyReport[rpts.Count];
rpts.CopyTo(result, 0);
return(result);
//return (SurgicalPathologyReport[])lst.ToArray(typeof(SurgicalPathologyReport));
}
