public void GenerateMinimumSD()
{
string sourcePath = Configuration.GetValue <string>("sourcePath");
string outputPath = Configuration.GetValue <string>("outputPath");
string canonicalBase = Configuration.GetValue <string>("defaults:baseurl");
string publisher = Configuration.GetValue <string>("defaults:publisher");
ScanResources processor = new ScanResources(sourcePath, outputPath,
canonicalBase, publisher);
var sd = processor.CreateProfileWithAllMinZero("http://hl7.org/fhir/StructureDefinition/Patient", canonicalBase);
DebugDumpOutputXml(sd);
// processor.SaveStructureDefinition(sd);
}
public void TestElementCollection()
{
string sourcePath = Configuration.GetValue <string>("sourcePath");
string outputPath = Configuration.GetValue <string>("outputPath");
string canonicalBase = Configuration.GetValue <string>("defaults:baseurl");
string publisher = Configuration.GetValue <string>("defaults:publisher");
ScanResources processor = new ScanResources(sourcePath, outputPath,
canonicalBase, publisher);
var sd = processor.sourceSD.ResolveByCanonicalUri("http://hl7.org/fhir/StructureDefinition/Patient") as StructureDefinition;
Assert.AreEqual(28, sd.Differential.Element.Count());
ElementDefinitionCollection edc = new ElementDefinitionCollection(processor.sourceSD, sd.Differential.Element.ToList());
Assert.AreEqual(28, edc.Elements.Count());
}
public void DiscoverExtensionsInFolderXml()
{
string sourcePath = Configuration.GetValue <string>("sourcePath");
string outputPath = Configuration.GetValue <string>("outputPath");
string canonicalBase = Configuration.GetValue <string>("defaults:baseurl");
string publisher = Configuration.GetValue <string>("defaults:publisher");
ScanResources processor = new ScanResources(sourcePath, outputPath,
canonicalBase, publisher);
string exampleResourcesPath = Configuration.GetValue <string>("scanExamplesInPath");
foreach (string file in Directory.EnumerateFiles(exampleResourcesPath, "*.xml", SearchOption.AllDirectories))
{
try
{
var resource = new FhirXmlParser().Parse <Resource>(File.ReadAllText(file));
System.Diagnostics.Trace.WriteLine($"{file} {resource.TypeName}/{resource.Id}");
if (resource is Bundle bundle)
{
foreach (var entry in bundle.Entry.Select(e => e.Resource))
{
if (entry != null)
{
System.Diagnostics.Trace.WriteLine($" -->{entry.TypeName}/{entry.Id}");
processor.ScanForExtensions(null, entry.ToTypedElement(), null);
}
}
}
else
{
processor.ScanForExtensions(null, resource.ToTypedElement(), null);
}
}
catch (Exception ex)
{
System.Diagnostics.Trace.WriteLine($"{file}");
System.Diagnostics.Trace.WriteLine($" ==> Exception {ex.Message}");
}
}
// Next pass was to update the type profile - including the generated extensions.
// - while merging the profile
// -- if it is sliced, but not slice for the value, suggest a new one?
// -- with observations - based on a common profile, then train it on a folder to learn what they should look like
}
public void DiscoverExtensionsOnFhirServer()
{
string sourcePath = Configuration.GetValue <string>("sourcePath");
string outputPath = Configuration.GetValue <string>("outputPath");
string canonicalBase = Configuration.GetValue <string>("defaults:baseurl");
string publisher = Configuration.GetValue <string>("defaults:publisher");
ScanResources processor = new ScanResources(sourcePath, outputPath,
canonicalBase, publisher);
var settings = Configuration.GetSection("scanserver").Get <ScanServerSettings>();
var server = new FhirClient(settings.baseurl, new FhirClientSettings()
{
VerifyFhirVersion = false
});
int createdResources = 0;
foreach (var query in settings.queries)
{
try
{
Bundle batch = server.Get(server.Endpoint + query) as Bundle;
do
{
foreach (var entry in batch.Entry.Select(e => e.Resource))
{
if (entry != null)
{
System.Diagnostics.Trace.WriteLine($" -->{entry.TypeName}/{entry.Id}");
processor.ScanForExtensions(null, entry.ToTypedElement(), null);
createdResources++;
}
}
// if (batch.NextLink == null)
break;
batch = server.Continue(batch);
}while (true);
}
catch (FhirOperationException ex)
{
DebugDumpOutputXml(ex.Outcome);
}
}
}
public void TestElementUsePropertyFromBase()
{
string sourcePath = Configuration.GetValue <string>("sourcePath");
string outputPath = Configuration.GetValue <string>("outputPath");
string canonicalBase = Configuration.GetValue <string>("defaults:baseurl");
string publisher = Configuration.GetValue <string>("defaults:publisher");
ScanResources processor = new ScanResources(sourcePath, outputPath,
canonicalBase, publisher);
var sd = processor.sourceSD.ResolveByCanonicalUri("http://hl7.org/fhir/StructureDefinition/Patient") as StructureDefinition;
Assert.AreEqual(28, sd.Differential.Element.Count());
ElementDefinitionCollection edc = new ElementDefinitionCollection(processor.sourceSD, sd.Differential.Element.ToList());
Assert.AreEqual(28, edc.Elements.Count());
edc.IncludeElementFromBaseOrDatatype("Patient.telecom.system");
Assert.AreEqual(33, edc.Elements.Count());
edc.IncludeElementFromBaseOrDatatype("Patient.identifier.value");
Assert.AreEqual(39, edc.Elements.Count());
}