public static Set <char> PropertyNameToAASet(string propertyName)
        {
            KmerProperties kmerProperties = KmerProperties.GetInstance();

            int propertyNum = kmerProperties.PropertyToNumber[propertyName];

            Set <char> aaSet = Set <char> .GetInstance();

            foreach (KeyValuePair <string, bool[]> aaAndBits in kmerProperties.AABits)
            {
                if (aaAndBits.Value[propertyNum])
                {
                    char aa = Biology.GetInstance().ThreeLetterAminoAcidAbbrevTo1Letter[aaAndBits.Key];
                    aaSet.AddNew(aa);
                }
            }

            return(aaSet);
        }
        public static Dictionary <string, List <string> > CreateAAToPropList()
        {
            Dictionary <string, List <string> > aaToPropList = new Dictionary <string, List <string> >();

            foreach (string aa in Biology.GetInstance().AminoAcidCollection.Keys)
            {
                if (aa == "STOP" || aa == "DELETE")
                {
                    continue;
                }
                bool[]        rgsBit   = KmerProperties.GetInstance().AABits[aa];
                List <string> probList = new List <string>();
                for (int iProperty = 0; iProperty < rgsBit.Length; ++iProperty)
                {
                    if (rgsBit[iProperty])
                    {
                        string property = KmerProperties.GetInstance().AAPropertyCollection[iProperty];
                        probList.Add(property);
                    }
                }
                aaToPropList.Add(aa, probList);
            }
            return(aaToPropList);
        }