public static EvaluationResultsFisher GetInstance(ModelEvaluatorDiscreteFisher modelEvaluatorDiscreteFisher, List <Score> nullScores, Score altScore, TwoByTwo fishers2by2)
{
double pValue = fishers2by2.FisherExactTest;
int[] fisherCounts = fishers2by2.ToOneDArray();
return(new EvaluationResultsFisher(modelEvaluatorDiscreteFisher, nullScores, altScore, fisherCounts, 1, pValue));
}
new public static ModelEvaluatorDiscrete GetInstance(string nameAndParameters, ModelScorer scorer)
{
nameAndParameters = nameAndParameters.ToLower();
if (nameAndParameters.StartsWith(ModelEvaluatorDiscreteConditional.BaseName.ToLower()))
{
return(ModelEvaluatorDiscreteConditional.GetInstance(nameAndParameters.Substring(ModelEvaluatorDiscreteConditional.BaseName.Length), scorer));
}
else if (nameAndParameters.StartsWith(ModelEvaluatorDiscreteJoint.BaseName.ToLower()))
{
return(ModelEvaluatorDiscreteJoint.GetInstance(nameAndParameters.Substring(ModelEvaluatorDiscreteJoint.BaseName.Length), scorer));
}
else if (nameAndParameters.Equals(ModelEvaluatorDiscreteFisher.BaseName.ToLower()))
{
return(ModelEvaluatorDiscreteFisher.GetInstance(scorer.PhyloTree.LeafCollection));
}
throw new ArgumentException("Cold not parse " + nameAndParameters + " into a ModelEvaluatorDiscrete.");
}