public DepthOnleElementModel readDepthOneElementInput(string path)
{
string readText = string.Empty;
var pattern = @"\{(.*?)\}";
DepthOnleElementModel model = new DepthOnleElementModel();
if (File.Exists(path))
{
readText = File.ReadAllText(path);
}
else
{
return(new DepthOnleElementModel());
}
if (!string.IsNullOrEmpty(readText))
{
var matches = Regex.Matches(readText, pattern);
List <TreeNode> TreeNodes = new List <TreeNode>();
TreeNode node;
int i = 1;
foreach (Match m in matches)
{
string values = m.Groups[1].Value.Trim();
string[] array = values.Split(',');
node = new TreeNode();
node._Position = i;
List <Taxa> taxas = new List <Taxa>();
foreach (string v in array)
{
Taxa t = new Taxa();
t._Taxa_Value = v.Trim();
taxas.Add(t);
}
if (taxas.Count != 0)
{
node.TaxaList = taxas;
TreeNodes.Add(node);
}
i++;
}
if (TreeNodes.Count != 0)
{
model.NodeList = new List <TreeNode>(TreeNodes);
}
}
return(model);
}
public void CalculateFinalTree()
{
DepthOnleElementModel model = new DepthOnleElementModel();
List <TreeNode> nodes = new List <TreeNode>();
List <Taxa> tx = new List <Taxa>();
TreeNode node = new TreeNode();
string checkTaxa = string.Empty;
foreach (Pair p in ListOfPairWithWrongTaxa)
{
if (p.tx1 == p.wrongTaxa)
{
checkTaxa = p.tx2;
}
else
{
checkTaxa = p.tx1;
}
Taxa t1 = getTaxa(checkTaxa);
int p1 = getPosition(t1);
Taxa wTaxa = getTaxa(p.wrongTaxa);
foreach (TreeNode n in depth1Elements.NodeList)
{
if (n._Position == p1)
{
n.TaxaList.Add(wTaxa);
break;
}
}
}
OutputProcessing.printDepthOneWithNewDuplicationMethod(PathOutputAfterNewDuplication, depth1Elements.NodeList);
OutputProcessing.printWrongPositionedTaxa(PathOutputForWrongPositionedTaxa, ListOfPairWithWrongTaxa);
}
/*
* public FinalPartition readFinalPartitionInput(string path)
* {
*
* string readText = string.Empty;
* var pattern = @"\{(.*?)\}";
* FinalPartition model = new FinalPartition();
* if (File.Exists(path))
* {
* readText = File.ReadAllText(path);
*
* }
* else
* {
* return new FinalPartition();
* }
* if (!string.IsNullOrEmpty(readText))
* {
* var matches = Regex.Matches(readText, pattern);
* List<TreeNode> TreeNodes = new List<TreeNode>();
* TreeNode node;
* int i = 1;
* int count = 0;
* foreach (Match m in matches)
* {
* TreeNodes = new List<TreeNode>();
* string values = m.Groups[1].Value.Trim();
* string[] array = values.Split(',');
*
* node = new TreeNode();
* node._Position = i;
* List<Taxa> taxas = new List<Taxa>();
* foreach (string v in array)
* {
*
* Taxa t = new Taxa();
* t._Taxa_Value = v.Trim();
* taxas.Add(t);
*
* }
* if (taxas.Count != 0)
* {
* node.TaxaList = taxas;
* TreeNodes.Add(node);
* }
*
* if (TreeNodes.Count != 0 && count == 0)
* {
* model.LeftPart = new List<TreeNode>(TreeNodes);
* }
* if (TreeNodes.Count != 0 && count == 1)
* {
* model.RightPart = new List<TreeNode>(TreeNodes);
* }
*
* i++;
* count++;
* }
*
*
*
* }
*
* return model;
*
*
* }
*/
#endregion
//Constructor
public NewDuplicationCalculation()
{
depth1Elements = readDepthOneElementInput(PathDepthOne);
ListOfInconsistent = readInconsistentQuatret(PathInconsistentQuatret);
//finalPartitionAfterDepthOneElement = readFinalPartitionInput(PathFinalPartitionAfterDepthOne);
}