public override bool Equals(Object o)
{
if (o is Kmer <A> )
{
Kmer <A> otherKmer = (Kmer <A>)o;
if (otherKmer.Count == this.Count)
{
return(this.Zip(otherKmer, (a, b) => a.Equals(b)).Conjunction()); //TODO: Is this the right equality operator? Nulls?
}
}
return(false);
}
public double GetKeyFracLaplace(Kmer <Tyvar> val)
{
return(GetKeyFracLaplace(val, 1));
}
public double GetKeyFracLaplace(Kmer <Tyvar> val, double smoothingAmt)
{
return(((double)getCount(val) + smoothingAmt) / ((double)sizes[val.Count] + smoothingAmt)); //TODO is this laplacian smoothing?
}
public double GetKeyFrac(Kmer <Tyvar> v)
{
//Console.WriteLine ("f(" + v + ") = " + (double)getCount (v) + " / " + (double)sizes[v.Count]);
return((double)getCount(v) / (double)sizes[v.Count]);
}
public int getCount(Kmer <Tyvar> item)
{
return(data[item.Count].getCount(item));
}
public void AddKmer(Kmer <Tyvar> toAdd, int count)
{
data[toAdd.Count].Add(toAdd, count);
sizes[toAdd.Count] += count;
}
public void AddKmer(Kmer <Tyvar> toAdd)
{
data[toAdd.Count].Add(toAdd);
sizes[toAdd.Count]++;
}
