public static void AssertEpochsEqual(Epoch expected, IPersistentEpoch actual)
{
Assert.AreEqual((DateTimeOffset)expected.StartTime, actual.StartTime);
Assert.AreEqual((DateTimeOffset)expected.StartTime + expected.Duration, actual.EndTime);
CollectionAssert.AreEquivalent(expected.ProtocolParameters, actual.ProtocolParameters);
CollectionAssert.AreEquivalent(expected.Properties, actual.Properties);
CollectionAssert.AreEquivalent(expected.Keywords, actual.Keywords);
// Backgrounds
Assert.AreEqual(expected.Backgrounds.Count, actual.Backgrounds.Count());
foreach (var kv in expected.Backgrounds)
{
var a = actual.Backgrounds.First(b => b.Device.Name == kv.Key.Name && b.Device.Manufacturer == kv.Key.Manufacturer);
Assert.AreEqual(a.Epoch, actual);
AssertBackgroundsEqual(kv.Value, a);
}
// Stimuli
Assert.AreEqual(expected.Stimuli.Count, actual.Stimuli.Count());
foreach (var kv in expected.Stimuli)
{
var a = actual.Stimuli.First(b => b.Device.Name == kv.Key.Name && b.Device.Manufacturer == kv.Key.Manufacturer);
Assert.AreEqual(a.Epoch, actual);
AssertStimuliEqual(kv.Value, a);
}
// Responses
Assert.AreEqual(expected.Responses.Count, actual.Responses.Count());
foreach (var kv in expected.Responses)
{
var a = actual.Responses.First(b => b.Device.Name == kv.Key.Name && b.Device.Manufacturer == kv.Key.Manufacturer);
Assert.AreEqual(a.Epoch, actual);
AssertResponsesEqual(kv.Value, a);
}
}
public void IsIndefiniteIfAnyStimulusIsIndefinite()
{
Epoch e = new Epoch("");
var dev = new UnitConvertingExternalDevice("name", "co", new Measurement(1.0m, "units"));
var dev2 = new UnitConvertingExternalDevice("name2", "co", new Measurement(1.0m, "units"));
Assert.That(e.IsIndefinite, Is.False);
e.Stimuli[dev2] = new DelegatedStimulus("stimID", "units", new Measurement(1000, "Hz"),
new Dictionary<string, object>(),
(p, b) => null,
(p) => Option<TimeSpan>.Some(TimeSpan.FromMilliseconds(100)));
Assert.That(e.IsIndefinite, Is.False);
e.Stimuli[dev] = new DelegatedStimulus("stimID", "units", new Measurement(1000, "Hz"),
new Dictionary<string, object>(),
(p, b) => null,
(p) => Option<TimeSpan>.None());
Assert.That(e.IsIndefinite, Is.True);
e.Stimuli.Clear();
Assert.That(e.IsIndefinite, Is.False);
}
public void OutputPipelineContinuity(
[Values(1000, 5000, 10000, 15000, 20000)] double sampleRate,
[Values(0.1, 0.5, 1, 5)] double blockDurationSeconds
)
{
const double epochDuration = 2; //seconds
var srate = new Measurement((decimal) sampleRate, "Hz");
var daq = new TestDAQController();
var outStream = new DAQOutputStream("OUT")
{
SampleRate = srate,
MeasurementConversionTarget = "V"
};
var inStream = new DAQInputStream("IN")
{
SampleRate = srate,
MeasurementConversionTarget = "V"
};
var controller = new Controller() { Clock = daq, DAQController = daq };
var dev = new UnitConvertingExternalDevice("dev", "co", controller, new Measurement(0, "V"))
{
Clock = daq,
MeasurementConversionTarget = "V",
OutputSampleRate = srate,
InputSampleRate = srate
};
dev.BindStream(outStream).BindStream(inStream);
// Setup Epoch
var e = new Epoch("OutputPipelineContinuity");
var nSamples = (int)TimeSpan.FromSeconds(epochDuration).Samples(srate);
IList<IMeasurement> stimData = (IList<IMeasurement>) Enumerable.Range(0, nSamples)
.Select(i => new Measurement((decimal) (8 * Math.Sin(((double)i) / (nSamples / 10.0))), "V") as IMeasurement)
.ToList();
IOutputData stimOutputData = new OutputData(stimData, srate);
var stim = new RenderedStimulus((string) "RenderedStimulus", (IDictionary<string, object>) new Dictionary<string, object>(),
stimOutputData);
e.Stimuli[dev] = stim;
e.Responses[dev] = new Response();
e.Backgrounds[dev] = new Background(new Measurement(0, "V"), srate);
controller.EnqueueEpoch(e);
var blockSpan = TimeSpan.FromSeconds(blockDurationSeconds);
foreach (var stimBlock in stim.DataBlocks(blockSpan))
{
var cons = stimOutputData.SplitData(blockSpan);
var expected = cons.Head.Data;
stimOutputData = cons.Rest;
Assert.That(stimBlock.Data, Is.EqualTo(expected));
}
}
public void InstantiatesDictionaries()
{
Epoch e = new Epoch("Protocol", new Dictionary<string, object>());
Assert.IsNotNull(e.ProtocolParameters);
Assert.IsNotNull(e.Stimuli);
Assert.IsNotNull(e.Responses);
Assert.IsNotNull(e.ProtocolParameters);
Assert.IsNotNull(e.Backgrounds);
}
public void ConvenienceConstructor()
{
Epoch e = new Epoch("Protocol");
Assert.IsNotNull(e.ProtocolParameters);
Assert.IsNotNull(e.Stimuli);
Assert.IsNotNull(e.Responses);
Assert.IsNotNull(e.ProtocolParameters);
Assert.IsNotNull(e.Backgrounds);
Assert.IsFalse(e.ShouldWaitForTrigger);
}
protected override void WriteBackgroundElement(Epoch e, IExternalDevice ed, Epoch.EpochBackground bg)
{
writer.WriteStartElement(ed.Name);
writer.WriteStartElement("backgroundMeasurement");
WriteMeasurement(bg.Background);
writer.WriteEndElement();
writer.WriteStartElement("sampleRate");
WriteMeasurement(bg.SampleRate);
writer.WriteEndElement();
writer.WriteEndElement();
}
public void DurationsSumUpCorrectly()
{
Epoch e = new Epoch("Protocol");
var ed = new UnitConvertingExternalDevice("TEST-DEVICE", "DEVICE-CO", new Measurement(0, "V"));
IMeasurement UNUSED_SRATE = new Measurement(1000, "Hz");
e.Stimuli[ed] = new RenderedStimulus((string) "RenderedStimulus", (IDictionary<string, object>) new Dictionary<string, object>(),
(IOutputData) new OutputData(new Measurement[] {
new Measurement(0, "units"),
new Measurement(1, "units")
}.ToList(), UNUSED_SRATE, false));
// More to do here (later)
}
public void ShouldSurfaceExceptionInPersistorTask()
{
var c = new Controller();
bool evt = false;
c.DAQController = new TestDAQController();
c.Clock = c.DAQController as IClock;
var persistor = new AggregateExceptionThrowingEpochPersistor();
c.SavedEpoch += (co, args) =>
{
evt = true;
};
var dev = new UnitConvertingExternalDevice(UNUSED_DEVICE_NAME, UNUSED_DEVICE_MANUFACTURER, UNUSED_BACKGROUND)
{
Controller = c,
MeasurementConversionTarget = "V"
};
var outStream = new DAQOutputStream("outStream") { MeasurementConversionTarget = "V" };
var inStream = new DAQInputStream("inStream") { MeasurementConversionTarget = "V" };
(c.DAQController as IMutableDAQController).AddStream(outStream);
(c.DAQController as IMutableDAQController).AddStream(inStream);
var srate = new Measurement(10, "Hz");
outStream.SampleRate = srate;
inStream.SampleRate = srate;
dev.BindStream(outStream);
dev.BindStream(inStream);
var e = new Epoch(UNUSED_PROTOCOL);
var samples = new List<IMeasurement> { new Measurement(1.0m, "V"), new Measurement(1.0m, "V"), new Measurement(1.0m, "V") };
var data = new OutputData(samples,
srate,
true);
e.Stimuli[dev] = new RenderedStimulus((string) "stimID",
(IDictionary<string, object>) new Dictionary<string, object>(),
(IOutputData) data);
e.Responses[dev] = new Response();
e.Background[dev] = new Epoch.EpochBackground(new Measurement(0, "V"), srate);
((TestDAQController)c.DAQController).AddStreamMapping(outStream, inStream);
Assert.That(() => c.RunEpoch(e, persistor), Throws.TypeOf<SymphonyControllerException>());
}
public void ShouldNotPersistEpochGivenNullPersistor()
{
var c = new Controller();
bool evt = false;
c.DAQController = new TestDAQController();
c.Clock = c.DAQController as IClock;
c.DiscardedEpoch += (co, args) => Assert.Fail("Run failed");
var dev = new UnitConvertingExternalDevice(UNUSED_DEVICE_NAME, UNUSED_DEVICE_MANUFACTURER, UNUSED_BACKGROUND)
{
Controller = c,
MeasurementConversionTarget = "V"
};
var outStream = new DAQOutputStream("outStream") { MeasurementConversionTarget = "V" };
var inStream = new DAQInputStream("inStream") { MeasurementConversionTarget = "V" };
(c.DAQController as IMutableDAQController).AddStream(outStream);
(c.DAQController as IMutableDAQController).AddStream(inStream);
var srate = new Measurement(10, "Hz");
outStream.SampleRate = srate;
inStream.SampleRate = srate;
dev.BindStream(outStream);
dev.BindStream(inStream);
var e = new Epoch(UNUSED_PROTOCOL);
var samples = new List<IMeasurement> { new Measurement(1.0m, "V"), new Measurement(1.0m, "V"), new Measurement(1.0m, "V") };
var data = new OutputData(samples,
srate,
true);
e.Stimuli[dev] = new RenderedStimulus((string) "stimID",
(IDictionary<string, object>) new Dictionary<string, object>(),
(IOutputData) data);
e.Responses[dev] = new Response();
e.Background[dev] = new Epoch.EpochBackground(new Measurement(0, "V"), srate);
((TestDAQController)c.DAQController).AddStreamMapping(outStream, inStream);
c.RunEpoch(e, null);
Assert.Pass();
}
public void RunEpochThrowsGivenIndefiniteEpochWithResponses()
{
var c = new Controller();
var e = new Epoch(UNUSED_PROTOCOL);
var dev2 = new UnitConvertingExternalDevice("dev2", "co", c, new Measurement(0, "V"));
var sampleRate = new Measurement(1, "Hz");
e.Stimuli[dev2] = new DelegatedStimulus("ID2", "units",
new Dictionary<string, object>(),
(x, y) => null,
(p) => Option<TimeSpan>.None());
e.Responses[dev2] = new Response();
Assert.That(() => c.RunEpoch(e, new FakeEpochPersistor()), Throws.Exception.TypeOf<ArgumentException>());
}
protected override void WriteBackground(Epoch e, IDictionary <IExternalDevice, Epoch.EpochBackground> background)
{
writer.WriteStartElement("background");
base.WriteBackground(e, background);
writer.WriteEndElement();
}
protected virtual void WriteEpochEnd(Epoch e)
{
Console.WriteLine("Epoch end");
}
public void ShouldAddProperties()
{
var e = new Epoch(UNUSED_PROTOCOL_ID);
Assert.That(e.Properties, Is.Empty);
e.Properties.Add("prop1", 3);
e.Properties.Add("prop2", "hello");
Assert.That(e.Properties, Contains.Item(new KeyValuePair<string, int>("prop1", 3)));
Assert.That(e.Properties, Contains.Item(new KeyValuePair<string, string>("prop2", "hello")));
}
/// <summary>
/// Serialize an Epoch instance to some kind of persistent medium (file/database/etc).
/// </summary>
/// <param name="e">The Epoch to serialize.</param>
public virtual void Serialize(Epoch e)
{
Serialize(e, null);
}
protected override void WriteEpochEnd(Epoch e)
{
writer.WriteEndElement();
writer.Flush();
}
protected override void WriteResponsesEnd(Epoch e)
{
writer.WriteEndElement();
}
protected override void WriteResponsesStart(Epoch e)
{
writer.WriteStartElement("responses");
}
protected override void WriteStimuliEnd(Epoch e)
{
writer.WriteEndElement();
}
protected override void WriteStimuliStart(Epoch e)
{
writer.WriteStartElement("stimuli");
}
protected override void WriteProtocolParams(Epoch e, IDictionary <string, object> protoParams)
{
WriteDictionary("protocolParameters", protoParams);
}
protected override void WriteKeyword(Epoch e, string keyword)
{
writer.WriteStartElement("keyword");
writer.WriteAttributeString("tag", keyword);
writer.WriteEndElement();
}
public void SetCurrentEpoch(Epoch e)
{
this.EnqueueEpoch(e);
this.NextEpoch();
}
public void ShouldAllowLongStringEpochParameters()
{
if (File.Exists("..\\..\\..\\ShouldAllowLongStringEpochParameters.h5"))
File.Delete("..\\..\\..\\ShouldAllowLongStringEpochParameters.h5");
var gID = new Guid("{2F2719F7-4A8C-4C22-9698-BE999DBC5385}");
using (
var exp = new EpochHDF5Persistor("..\\..\\..\\ShouldAllowLongStringEpochParameters.h5", null, () => gID)
)
{
var time = new DateTimeOffset(1000, TimeSpan.Zero);
var guid = new Guid("053C64D4-ED7A-4128-AA43-ED115716A97D");
var props = new Dictionary<string, object>();
props["key1"] =
"1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890";
//100 elements
props["key2"] = 2;
const string protocolID = "Epoch.Fixture";
Dictionary<string, object> parameters = props;
dev1 = new UnitConvertingExternalDevice(dev1Name, "DEVICECO", new Measurement(0, "V"));
dev2 = new UnitConvertingExternalDevice(dev2Name, "DEVICECO", new Measurement(0, "V"));
var stream1 = new DAQInputStream("Stream1");
var stream2 = new DAQInputStream("Stream2");
var stimParameters = new Dictionary<string, object>();
stimParameters[param1] = value1;
stimParameters[param2] = value2;
var srate = new Measurement(1000, "Hz");
List<Measurement> samples =
Enumerable.Range(0, 10000).Select(i => new Measurement((decimal) Math.Sin((double) i/100), "mV")).
ToList();
var stimData = new OutputData(samples, srate, false);
var stim1 = new RenderedStimulus("RenderedStimulus", stimParameters, stimData);
//.Data does not need to be persisted
var stim2 = new RenderedStimulus("RenderedStimulus", stimParameters, stimData);
//.Data does not need to be persisted
var e = new Epoch(protocolID, parameters);
e.Stimuli[dev1] = stim1;
e.Stimuli[dev2] = stim2;
DateTimeOffset start = DateTimeOffset.Parse("1/11/2011 6:03:29 PM -08:00");
// Do this to match the XML stored in the EpochXML.txt resource
e.StartTime = Maybe<DateTimeOffset>.Yes(start);
e.Background[dev1] = new Epoch.EpochBackground(new Measurement(0, "V"), new Measurement(1000, "Hz"));
e.Background[dev2] = new Epoch.EpochBackground(new Measurement(1, "V"), new Measurement(1000, "Hz"));
e.Responses[dev1] = new Response();
e.Responses[dev2] = new Response();
var streamConfig = new Dictionary<string, object>();
streamConfig[param1] = value1;
var devConfig = new Dictionary<string, object>();
devConfig[param2] = value2;
IInputData responseData1 = new InputData(samples, srate, start)
.DataWithStreamConfiguration(stream1, streamConfig)
.DataWithExternalDeviceConfiguration(dev1, devConfig);
IInputData responseData2 = new InputData(samples, srate, start)
.DataWithStreamConfiguration(stream2, streamConfig)
.DataWithExternalDeviceConfiguration(dev2, devConfig);
e.Responses[dev1].AppendData(responseData1);
e.Responses[dev2].AppendData(responseData2);
e.Keywords.Add(kw1);
e.Keywords.Add(kw2);
exp.BeginEpochGroup("label", "source identifier", new[] {"keyword1", "keyword2"}, props, guid,
time);
exp.Serialize(e);
exp.EndEpochGroup(time.AddMilliseconds(100));
exp.Close();
}
H5.Close();
var startInfo = new ProcessStartInfo(@"..\..\..\..\..\..\externals\HDF5\bin\h5dump",
@" --xml ..\..\..\ShouldAllowLongStringEpochParameters.h5");
startInfo.RedirectStandardOutput = true;
startInfo.UseShellExecute = false;
Process proc = Process.Start(startInfo);
Approvals.VerifyXml(proc.StandardOutput.ReadToEnd());
}
public override void Serialize(Epoch e)
{
((LinkedList <Epoch>)PersistedEpochs).AddLast(e);
}
public void SetsProtocolID()
{
string expected = "ted rocks";
Epoch e = new Epoch(expected, new Dictionary<string, object>());
Assert.AreEqual(expected, e.ProtocolID);
}
public override void Serialize(Epoch e)
{
throw new AggregateException();
}
public void SimpleCreation()
{
Epoch epoch = new Epoch("Protocol", new Dictionary<string, object>());
Assert.IsNotNull(epoch);
}
private void OnReceivedInputData(Epoch epoch)
{
FireEvent(ReceivedInputData, epoch);
}
protected virtual void WriteResponsesEnd(Epoch e)
{
Console.WriteLine("Epoch responses end");
}
private void OnSavedEpoch(Epoch epoch)
{
FireEvent(SavedEpoch, epoch);
}
public void RunEpochThrowsGivenEpochWithInconsistentStimulusDurations()
{
var c = new Controller();
var e = new Epoch(UNUSED_PROTOCOL);
var dev1 = new UnitConvertingExternalDevice("dev1", "co", c, new Measurement(0, "V"));
var dev2 = new UnitConvertingExternalDevice("dev2", "co", c, new Measurement(0, "V"));
var sampleRate = new Measurement(1, "Hz");
e.Stimuli[dev1] = new RenderedStimulus((string) "ID1",
(IDictionary<string, object>) new Dictionary<string, object>(),
(IOutputData) new OutputData(new List<IMeasurement> { new Measurement(1, "V") },
sampleRate, true));
e.Stimuli[dev2] = new RenderedStimulus((string) "ID2",
(IDictionary<string, object>) new Dictionary<string, object>(),
(IOutputData) new OutputData(new List<IMeasurement> { new Measurement(1, "V"), new Measurement(1, "V") },
sampleRate, true));
Assert.That(() => c.RunEpoch(e, new FakeEpochPersistor()), Throws.Exception.TypeOf<ArgumentException>());
e.Stimuli[dev2] = new DelegatedStimulus("ID2", "V",
new Dictionary<string, object>(),
(x, y) => null,
(p) => Option<TimeSpan>.None());
Assert.That(() => c.RunEpoch(e, new FakeEpochPersistor()), Throws.Exception.TypeOf<ArgumentException>());
}
private void OnCompletedEpoch(Epoch epoch)
{
FireEvent(CompletedEpoch, epoch);
}
public void ShouldDiscardEpochsWithExceptionalStop()
{
var c = new Controller();
bool evt = false;
c.DAQController = new ExceptionThrowingDAQController();
c.DAQController.Clock = c.DAQController as IClock;
c.Clock = c.DAQController as IClock;
var persistor = new FakeEpochPersistor();
c.DiscardedEpoch += (co, args) => evt = true;
var e = new Epoch(UNUSED_PROTOCOL);
try
{
c.RunEpoch(e, persistor);
}
catch (Exception)
{ }
Assert.True(evt);
Assert.False(persistor.PersistedEpochs.ToList().Contains(e));
}
private void OnDiscardedEpoch(Epoch epoch)
{
FireEvent(DiscardedEpoch, epoch);
}
public void ShouldSupplyEpochBackgroundForExternalDevicesWithoutStimuli()
{
var c = new Controller();
var dev1 = new UnitConvertingExternalDevice("dev1", "co", c, new Measurement(0, "V"));
var dev2 = new UnitConvertingExternalDevice("dev2", "co", c, new Measurement(0, "V"));
int baseSamples = 1000;
IList<IMeasurement> data = (IList<IMeasurement>)Enumerable.Range(0, baseSamples)
.Select(i => new Measurement(i, "V") as IMeasurement)
.ToList();
Measurement sampleRate = new Measurement(baseSamples, "Hz");
var config = new Dictionary<string, object>();
IOutputData data1 = new OutputData(data, sampleRate, true);
var e = new Epoch("");
e.Stimuli[dev1] = new RenderedStimulus((string) "RenderedStimulus", (IDictionary<string, object>) config, data1);
var backgroundMeasurement = new Measurement(3.2m, "V");
e.Background[dev2] = new Epoch.EpochBackground(backgroundMeasurement, sampleRate);
c.EnqueueEpoch(e);
c.NextEpoch();
var out1 = c.PullOutputData(dev1, e.Duration);
Assert.NotNull(out1);
var out2 = c.PullOutputData(dev2, e.Duration);
Assert.NotNull(out2);
Assert.AreEqual((TimeSpan)e.Duration, out2.Duration);
Assert.AreEqual(backgroundMeasurement, out2.Data.First());
}
private void FireEvent(EventHandler <TimeStampedEpochEventArgs> evt, Epoch epoch)
{
FireEvent(evt, new TimeStampedEpochEventArgs(Clock, epoch));
}
public void ShouldTruncateResponseAtEpochBoundary()
{
var c = new Controller();
var e = new Epoch(UNUSED_PROTOCOL);
var dev1 = new UnitConvertingExternalDevice("dev2", "co", c, new Measurement(0, "V"));
var sampleRate = new Measurement(1, "Hz");
var samples = new List<IMeasurement> { new Measurement(1, "V"), new Measurement(2, "V"), new Measurement(3, "V") };
var data = new OutputData(samples,
sampleRate, true);
e.Stimuli[dev1] = new RenderedStimulus((string) "ID1",
(IDictionary<string, object>) new Dictionary<string, object>(),
(IOutputData) data);
e.Responses[dev1] = new Response();
c.EnqueueEpoch(e);
c.NextEpoch();
c.PushInputData(dev1, new InputData(samples.Concat(samples).ToList(),
sampleRate,
DateTimeOffset.Now)
.DataWithStreamConfiguration(streamFake, new Dictionary<string, object>())
.DataWithExternalDeviceConfiguration(devFake, new Dictionary<string, object>()));
Assert.That(((TimeSpan)e.Responses[dev1].Duration), Is.EqualTo((TimeSpan)e.Duration));
}
/// <summary>
/// Add an Epoch to the Controller's Epoch queue. Epochs are presented in FIFO order from
/// this queue when running. You can use RunEpoch to bypass this queue, presenting an Epoch
/// immediately
/// </summary>
/// <param name="e">Epoch to add to the queue</param>
/// <see cref="RunEpoch"/>
public void EnqueueEpoch(Epoch e)
{
ValidateEpoch(e);
EpochQueue.Enqueue(e);
}
public TimeStampedEpochEventArgs(IClock clock, Epoch epoch)
: base(clock)
{
Epoch = epoch;
}
/// <summary>
/// The core entry point for the Controller Facade; push an Epoch in here, and when the
/// Epoch is finished processing, control will be returned to you.
///
/// <para>In other words, this
/// method is blocking--the Controller cannot run more than one Epoch at a time.</para>
/// </summary>
///
/// <param name="e">Single Epoch to present</param>
/// <param name="persistor">EpochPersistor for saving the data. May be null to indicate epoch should not be persisted</param>
/// <exception cref="ValidationException">Validation failed for this Controller</exception>
public void RunEpoch(Epoch e, EpochPersistor persistor)
{
var cts = new CancellationTokenSource();
var cancellationToken = cts.Token;
Task persistenceTask = null;
if (!ValidateEpoch(e))
{
throw new ArgumentException("Epoch is not valid");
}
if (!Validate())
{
throw new ValidationException(Validate());
}
// Starting with this Epoch
var cEpoch = CurrentEpoch;
CurrentEpoch = e;
EventHandler <TimeStampedEventArgs> nextRequested = (c, args) =>
{
DAQController.RequestStop();
OnDiscardedEpoch(CurrentEpoch);
};
bool epochPersisted = false;
EventHandler <TimeStampedEpochEventArgs> inputReceived = (c, args) =>
{
if (CurrentEpoch != null &&
CurrentEpoch.IsComplete)
{
log.Debug("Epoch complete. Requesting DAQController stop.");
DAQController.RequestStop();
if (persistor != null && !epochPersisted)
{
Epoch completedEpoch = CurrentEpoch;
persistenceTask = Task.Factory.StartNew(() =>
{
log.DebugFormat("Saving completed Epoch ({0})...", completedEpoch.StartTime);
SaveEpoch(persistor, completedEpoch);
},
cancellationToken,
TaskCreationOptions.PreferFairness,
SerialTaskScheduler)
.ContinueWith((task) =>
{
cancellationToken.ThrowIfCancellationRequested();
if (task.IsFaulted &&
task.Exception != null)
{
throw task.Exception;
}
OnCompletedEpoch(completedEpoch);
},
cancellationToken);
epochPersisted = true;
}
}
};
EventHandler <TimeStampedExceptionEventArgs> exceptionalStop = (daq, args) =>
{
log.Debug(
"Discarding epoch due to exception");
OnDiscardedEpoch(CurrentEpoch);
throw new SymphonyControllerException(
"DAQ Controller stopped", args.Exception);
};
try
{
NextEpochRequested += nextRequested;
ReceivedInputData += inputReceived;
DAQController.ExceptionalStop += exceptionalStop;
e.StartTime = Maybe <DateTimeOffset> .Some(this.Clock.Now);
log.DebugFormat("Starting epoch: {0}", CurrentEpoch.ProtocolID);
DAQController.Start(false);
}
finally
{
CurrentEpoch = cEpoch;
NextEpochRequested -= nextRequested;
ReceivedInputData -= inputReceived;
DAQController.ExceptionalStop -= exceptionalStop;
DAQController.WaitForInputTasks();
//Clear remaining input
UnusedInputData.Clear();
}
if (persistenceTask != null)
{
try
{
persistenceTask.Wait();
}
catch (AggregateException ex)
{
log.ErrorFormat("An error occurred while saving Epoch: {0}", ex);
throw new SymphonyControllerException("Unable to write Epoch data to persistor.",
ex.Flatten());
}
}
}
public void ShouldAllowNumericEpochParameters()
{
if (File.Exists("..\\..\\..\\ShouldAllowNumericEpochParameters.h5"))
File.Delete("..\\..\\..\\ShouldAllowNumericEpochParameters.h5");
var gID = new Guid("{2F2719F7-4A8C-4C22-9698-BE999DBC5385}");
using (var exp = new EpochHDF5Persistor("..\\..\\..\\ShouldAllowNumericEpochParameters.h5", null, () => gID)
)
{
var time = new DateTimeOffset(1000, TimeSpan.Zero);
var guid = new Guid("053C64D4-ED7A-4128-AA43-ED115716A97D");
var props = new Dictionary<string, object>();
props["int"] = 2;
props["float"] = 2.0f;
props["double"] = 2.0d;
props["decimal"] = 2.0m;
props["array"] = new[] {1.0, 2.0, 3.0};
props["short"] = (short) 2;
props["unit16"] = (UInt16) 1;
props["uint32"] = (UInt32) 2;
props["byte"] = (byte) 1;
props["bool"] = true;
const string protocolID = "Epoch.Fixture";
Dictionary<string, object> parameters = props;
dev1 = new UnitConvertingExternalDevice(dev1Name, "DEVICECO", new Measurement(0, "V"));
dev2 = new UnitConvertingExternalDevice(dev2Name, "DEVICECO", new Measurement(0, "V"));
var stream1 = new DAQInputStream("Stream1");
var stream2 = new DAQInputStream("Stream2");
var stimParameters = new Dictionary<string, object>();
stimParameters[param1] = value1;
stimParameters[param2] = value2;
var srate = new Measurement(1000, "Hz");
List<Measurement> samples =
Enumerable.Range(0, 10000).Select(i => new Measurement((decimal) Math.Sin((double) i/100), "V")).
ToList();
var stimData = new OutputData(samples, srate, false);
var stim1 = new RenderedStimulus("RenderedStimulus", stimParameters, stimData);
//.Data does not need to be persisted
var stim2 = new RenderedStimulus("RenderedStimulus", stimParameters, stimData);
//.Data does not need to be persisted
var e = new Epoch(protocolID, parameters);
e.Stimuli[dev1] = stim1;
e.Stimuli[dev2] = stim2;
DateTimeOffset start = DateTimeOffset.Parse("1/11/2011 6:03:29 PM -08:00");
// Do this to match the XML stored in the EpochXML.txt resource
e.StartTime = Maybe<DateTimeOffset>.Yes(start);
e.Background[dev1] = new Epoch.EpochBackground(new Measurement(0, "V"), new Measurement(1000, "Hz"));
e.Background[dev2] = new Epoch.EpochBackground(new Measurement(1, "V"), new Measurement(1000, "Hz"));
e.Responses[dev1] = new Response();
e.Responses[dev2] = new Response();
var streamConfig = new Dictionary<string, object>();
streamConfig[param1] = value1;
var devConfig = new Dictionary<string, object>();
devConfig[param2] = value2;
IInputData responseData1 = new InputData(samples, srate, start)
.DataWithStreamConfiguration(stream1, streamConfig)
.DataWithExternalDeviceConfiguration(dev1, devConfig);
IInputData responseData2 = new InputData(samples, srate, start)
.DataWithStreamConfiguration(stream2, streamConfig)
.DataWithExternalDeviceConfiguration(dev2, devConfig);
e.Responses[dev1].AppendData(responseData1);
e.Responses[dev2].AppendData(responseData2);
e.Keywords.Add(kw1);
e.Keywords.Add(kw2);
exp.BeginEpochGroup("label", "source identifier", new[] {"keyword1", "keyword2"}, props, guid,
time);
exp.Serialize(e);
exp.EndEpochGroup();
exp.Close();
}
H5.Close();
Approvals.VerifyFile("..\\..\\..\\ShouldAllowNumericEpochParameters.h5");
}
private void SaveEpoch(EpochPersistor persistor, Epoch e)
{
persistor.Serialize(e);
OnSavedEpoch(e);
}
public void MaybeHasStartTime()
{
Epoch e = new Epoch("");
Assert.False(e.StartTime);
var dev = new UnitConvertingExternalDevice("name", "co", new Measurement(1.0m, "units"));
var stim = new DelegatedStimulus("stimID", "units", new Measurement(1000, "Hz"),
new Dictionary<string, object>(),
(p, b) => null,
(p) => Option<TimeSpan>.None());
e.Stimuli[dev] = stim;
var expected = DateTimeOffset.Now;
stim.DidOutputData(expected, TimeSpan.FromSeconds(1), null);
Assert.AreEqual(expected, (DateTimeOffset)e.StartTime);
}
public void ShouldAllowLongStringEpochParameters()
{
if (File.Exists("..\\..\\..\\ShouldAllowLongStringEpochParameters.h5"))
{
File.Delete("..\\..\\..\\ShouldAllowLongStringEpochParameters.h5");
}
var gID = new Guid("{2F2719F7-4A8C-4C22-9698-BE999DBC5385}");
using (
var exp = new EpochHDF5Persistor("..\\..\\..\\ShouldAllowLongStringEpochParameters.h5", null, () => gID)
)
{
var time = new DateTimeOffset(1000, TimeSpan.Zero);
var guid = new Guid("053C64D4-ED7A-4128-AA43-ED115716A97D");
var props = new Dictionary <string, object>();
props["key1"] =
"1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890";
//100 elements
props["key2"] = 2;
const string protocolID = "Epoch.Fixture";
Dictionary <string, object> parameters = props;
dev1 = new UnitConvertingExternalDevice(dev1Name, "DEVICECO", new Measurement(0, "V"));
dev2 = new UnitConvertingExternalDevice(dev2Name, "DEVICECO", new Measurement(0, "V"));
var stream1 = new DAQInputStream("Stream1");
var stream2 = new DAQInputStream("Stream2");
var stimParameters = new Dictionary <string, object>();
stimParameters[param1] = value1;
stimParameters[param2] = value2;
var srate = new Measurement(1000, "Hz");
List <Measurement> samples =
Enumerable.Range(0, 10000).Select(i => new Measurement((decimal)Math.Sin((double)i / 100), "mV")).
ToList();
var stimData = new OutputData(samples, srate, false);
var stim1 = new RenderedStimulus("RenderedStimulus", stimParameters, stimData);
//.Data does not need to be persisted
var stim2 = new RenderedStimulus("RenderedStimulus", stimParameters, stimData);
//.Data does not need to be persisted
var e = new Epoch(protocolID, parameters);
e.Stimuli[dev1] = stim1;
e.Stimuli[dev2] = stim2;
DateTimeOffset start = DateTimeOffset.Parse("1/11/2011 6:03:29 PM -08:00");
// Do this to match the XML stored in the EpochXML.txt resource
e.StartTime = Maybe <DateTimeOffset> .Yes(start);
e.Background[dev1] = new Epoch.EpochBackground(new Measurement(0, "V"), new Measurement(1000, "Hz"));
e.Background[dev2] = new Epoch.EpochBackground(new Measurement(1, "V"), new Measurement(1000, "Hz"));
e.Responses[dev1] = new Response();
e.Responses[dev2] = new Response();
var streamConfig = new Dictionary <string, object>();
streamConfig[param1] = value1;
var devConfig = new Dictionary <string, object>();
devConfig[param2] = value2;
IInputData responseData1 = new InputData(samples, srate, start)
.DataWithStreamConfiguration(stream1, streamConfig)
.DataWithExternalDeviceConfiguration(dev1, devConfig);
IInputData responseData2 = new InputData(samples, srate, start)
.DataWithStreamConfiguration(stream2, streamConfig)
.DataWithExternalDeviceConfiguration(dev2, devConfig);
e.Responses[dev1].AppendData(responseData1);
e.Responses[dev2].AppendData(responseData2);
e.Keywords.Add(kw1);
e.Keywords.Add(kw2);
exp.BeginEpochGroup("label", "source identifier", new[] { "keyword1", "keyword2" }, props, guid,
time);
exp.Serialize(e);
exp.EndEpochGroup(time.AddMilliseconds(100));
exp.Close();
}
H5.Close();
var startInfo = new ProcessStartInfo(@"..\..\..\..\..\..\externals\HDF5\bin\h5dump",
@" --xml ..\..\..\ShouldAllowLongStringEpochParameters.h5");
startInfo.RedirectStandardOutput = true;
startInfo.UseShellExecute = false;
Process proc = Process.Start(startInfo);
Approvals.VerifyXml(proc.StandardOutput.ReadToEnd());
}
public void ShouldAddKeywords()
{
var e = new Epoch(UNUSED_PROTOCOL_ID);
var kw1 = "test";
var kw2 = "other";
Assert.That(e.Keywords, Is.Empty);
e.Keywords.Add(kw1);
e.Keywords.Add(kw2);
Assert.That(e.Keywords, Contains.Item(kw1));
Assert.That(e.Keywords, Contains.Item(kw2));
}
public void Setup()
{
const string protocolID = "Epoch.Fixture";
var parameters = new Dictionary <string, object>();
parameters[param1] = value1;
parameters[param2] = value2;
dev1 = new UnitConvertingExternalDevice(dev1Name, "DEVICECO", new Measurement(0, "V"));
dev2 = new UnitConvertingExternalDevice(dev2Name, "DEVICECO", new Measurement(0, "V"));
var stream1 = new DAQInputStream("Stream1");
var stream2 = new DAQInputStream("Stream2");
var stimParameters = new Dictionary <string, object>();
stimParameters[param1] = value1;
stimParameters[param2] = value2;
var srate = new Measurement(1000, "Hz");
List <Measurement> samples =
Enumerable.Range(0, 10000).Select(i => new Measurement((decimal)Math.Sin((double)i / 100), "V")).ToList();
var stimData = new OutputData(samples, srate, false);
var stim1 = new RenderedStimulus("RenderedStimulus", stimParameters, stimData);
//.Data does not need to be persisted
var stim2 = new RenderedStimulus("RenderedStimulus", stimParameters, stimData);
//.Data does not need to be persisted
var e = new Epoch(protocolID, parameters);
e.Stimuli[dev1] = stim1;
e.Stimuli[dev2] = stim2;
DateTimeOffset start = DateTimeOffset.Parse("1/11/2011 6:03:29 PM -08:00");
// Do this to match the XML stored in the EpochXML.txt resource
e.StartTime = Maybe <DateTimeOffset> .Yes(start);
e.Background[dev1] = new Epoch.EpochBackground(new Measurement(0, "V"), new Measurement(1000, "Hz"));
e.Background[dev2] = new Epoch.EpochBackground(new Measurement(1, "V"), new Measurement(1000, "Hz"));
e.Responses[dev1] = new Response();
e.Responses[dev2] = new Response();
var streamConfig = new Dictionary <string, object>();
streamConfig[param1] = value1;
var devConfig = new Dictionary <string, object>();
devConfig[param2] = value2;
IInputData responseData1 = new InputData(samples, srate, start)
.DataWithStreamConfiguration(stream1, streamConfig)
.DataWithExternalDeviceConfiguration(dev1, devConfig);
IInputData responseData2 = new InputData(samples, srate, start)
.DataWithStreamConfiguration(stream2, streamConfig)
.DataWithExternalDeviceConfiguration(dev2, devConfig);
e.Responses[dev1].AppendData(responseData1);
e.Responses[dev2].AppendData(responseData2);
e.Keywords.Add(kw1);
e.Keywords.Add(kw2);
testEpoch = e;
}
public void ShouldUniqueKeywords()
{
var e = new Epoch(UNUSED_PROTOCOL_ID);
var kw1 = "test";
e.Keywords.Add(kw1);
e.Keywords.Add(kw1);
Assert.That(e.Keywords, Contains.Item(kw1));
Assert.That(e.Keywords.Count(), Is.EqualTo(1));
}
public void Setup()
{
const string protocolID = "Epoch.Fixture";
var parameters = new Dictionary<string, object>();
parameters[param1] = value1;
parameters[param2] = value2;
dev1 = new UnitConvertingExternalDevice(dev1Name, "DEVICECO", new Measurement(0, "V"));
dev2 = new UnitConvertingExternalDevice(dev2Name, "DEVICECO", new Measurement(0, "V"));
var stream1 = new DAQInputStream("Stream1");
var stream2 = new DAQInputStream("Stream2");
var stimParameters = new Dictionary<string, object>();
stimParameters[param1] = value1;
stimParameters[param2] = value2;
var srate = new Measurement(1000, "Hz");
var samples = Enumerable.Range(0, 1000).Select(i => new Measurement((decimal)Math.Sin((double)i / 100), "V")).ToList();
var stimData = new OutputData(samples, srate, false);
RenderedStimulus stim1 = new RenderedStimulus((string) "RenderedStimulus", (IDictionary<string, object>) stimParameters, (IOutputData) stimData); //.Data does not need to be persisted
RenderedStimulus stim2 = new RenderedStimulus((string) "RenderedStimulus", (IDictionary<string, object>) stimParameters, (IOutputData) stimData); //.Data does not need to be persisted
Epoch e = new Epoch(protocolID, parameters);
e.Stimuli[dev1] = stim1;
e.Stimuli[dev2] = stim2;
var start = DateTimeOffset.Parse("1/11/2011 6:03:29 PM -08:00");
// Do this to match the XML stored in the EpochXML.txt resource
e.StartTime = Maybe<DateTimeOffset>.Yes(start);
e.Background[dev1] = new Epoch.EpochBackground(new Measurement(0, "V"), new Measurement(1000, "Hz"));
e.Background[dev2] = new Epoch.EpochBackground(new Measurement(1, "V"), new Measurement(1000, "Hz"));
e.Responses[dev1] = new Response();
e.Responses[dev2] = new Response();
var streamConfig = new Dictionary<string, object>();
streamConfig[param1] = value1;
var devConfig = new Dictionary<string, object>();
devConfig[param2] = value2;
var responseData1 = new InputData(samples, srate, start)
.DataWithStreamConfiguration(stream1, streamConfig)
.DataWithExternalDeviceConfiguration(dev1, devConfig);
var responseData2 = new InputData(samples, srate, start)
.DataWithStreamConfiguration(stream2, streamConfig)
.DataWithExternalDeviceConfiguration(dev2, devConfig);
e.Responses[dev1].AppendData(responseData1);
e.Responses[dev2].AppendData(responseData2);
e.Keywords.Add(kw1);
e.Keywords.Add(kw2);
testEpoch = e;
}
public void BlowAwayTestEpoch()
{
testEpoch = null;
dev1 = dev2 = null;
}
private static Controller SetupController(double sampleRate, out Epoch e, out IExternalDevice dev0, out RenderedStimulus stim1, out IExternalDevice dev1, out RenderedStimulus stim2, out IList<IMeasurement> stimData, int nChannels)
{
Converters.Clear();
Converters.Register("V", "V",
// just an identity conversion for now, to pass Validate()
(IMeasurement m) => m);
var streamNameMap = new Dictionary<string, string>();
streamNameMap["Out0"] = "In0";
if (nChannels > 1)
streamNameMap["Out1"] = "In1";
Controller controller = new Parser().ParseConfiguration(Resources.LowGainConfig);
var daq = (SimulationDAQController)controller.DAQController;
daq.Clock = daq;
foreach (var stream in daq.Streams)
{
stream.SampleRate = new Measurement((decimal) sampleRate, "Hz");
}
daq.SimulationRunner += (output, timestep) =>
{
var input = new ConcurrentDictionary<IDAQInputStream, IInputData>();
Parallel.ForEach(output, (kv) =>
{
var outData = kv.Value;
var outStream = kv.Key;
var inStream = daq.InputStreams.Where((s) =>
s.Name == streamNameMap[outStream.Name]).First();
var data = outData.DataWithUnits("V").Data;
var inData = new InputData(data,
outData.SampleRate,
DateTimeOffset.Now)
.DataWithNodeConfiguration("SimulationController",daq.Configuration);
input[inStream] = inData;
}
);
return input;
};
var protocolParams = new Dictionary<string, object>(1);
protocolParams["key1"] = "value1";
e = new Epoch("LowGainSimulation", protocolParams);
dev0 = controller.GetDevice("Device0");
dev1 = controller.GetDevice("Device1");
if (nChannels == 1)
{
dev1.UnbindStream(dev1.Streams.Values.First().Name);
}
stimData = Enumerable.Range(0, (int)(10 * sampleRate))
.Select(i => new Measurement(i, -3, "V") as IMeasurement)
.ToList();
var srate = new Measurement((decimal) sampleRate, "Hz");
stim1 = new RenderedStimulus((string) "RenderedStimulus",
(IDictionary<string, object>) new Dictionary<string, object>(),
(IOutputData) new OutputData(stimData, srate, false));
stim2 = new RenderedStimulus((string) "RenderedStimulus",
(IDictionary<string, object>) new Dictionary<string, object>(),
(IOutputData) new OutputData(stimData, srate, false));
e.Stimuli[dev0] = stim1;
if (nChannels > 1)
e.Stimuli[dev1] = stim2;
e.Responses[dev0] = new Response();
if (nChannels > 1)
e.Responses[dev1] = new Response();
e.Background[dev1] = new Epoch.EpochBackground(new Measurement(0, "V"), srate);
e.Background[dev0] = new Epoch.EpochBackground(new Measurement(0, "V"), srate);
return controller;
}
public override IPersistentEpoch Serialize(Epoch e)
{
throw new AggregateException();
}
protected virtual void WriteResponse(Epoch e, IExternalDevice ed, Response r)
{
// write r.Data
}
public void ShouldAllowNumericEpochParameters()
{
if (File.Exists("..\\..\\..\\ShouldAllowNumericEpochParameters.h5"))
{
File.Delete("..\\..\\..\\ShouldAllowNumericEpochParameters.h5");
}
var gID = new Guid("{2F2719F7-4A8C-4C22-9698-BE999DBC5385}");
using (var exp = new EpochHDF5Persistor("..\\..\\..\\ShouldAllowNumericEpochParameters.h5", null, () => gID)
)
{
var time = new DateTimeOffset(1000, TimeSpan.Zero);
var guid = new Guid("053C64D4-ED7A-4128-AA43-ED115716A97D");
var props = new Dictionary <string, object>();
props["int"] = 2;
props["float"] = 2.0f;
props["double"] = 2.0d;
props["decimal"] = 2.0m;
props["array"] = new[] { 1.0, 2.0, 3.0 };
props["short"] = (short)2;
props["unit16"] = (UInt16)1;
props["uint32"] = (UInt32)2;
props["byte"] = (byte)1;
props["bool"] = true;
const string protocolID = "Epoch.Fixture";
Dictionary <string, object> parameters = props;
dev1 = new UnitConvertingExternalDevice(dev1Name, "DEVICECO", new Measurement(0, "V"));
dev2 = new UnitConvertingExternalDevice(dev2Name, "DEVICECO", new Measurement(0, "V"));
var stream1 = new DAQInputStream("Stream1");
var stream2 = new DAQInputStream("Stream2");
var stimParameters = new Dictionary <string, object>();
stimParameters[param1] = value1;
stimParameters[param2] = value2;
var srate = new Measurement(1000, "Hz");
List <Measurement> samples =
Enumerable.Range(0, 10000).Select(i => new Measurement((decimal)Math.Sin((double)i / 100), "V")).
ToList();
var stimData = new OutputData(samples, srate, false);
var stim1 = new RenderedStimulus("RenderedStimulus", stimParameters, stimData);
//.Data does not need to be persisted
var stim2 = new RenderedStimulus("RenderedStimulus", stimParameters, stimData);
//.Data does not need to be persisted
var e = new Epoch(protocolID, parameters);
e.Stimuli[dev1] = stim1;
e.Stimuli[dev2] = stim2;
DateTimeOffset start = DateTimeOffset.Parse("1/11/2011 6:03:29 PM -08:00");
// Do this to match the XML stored in the EpochXML.txt resource
e.StartTime = Maybe <DateTimeOffset> .Yes(start);
e.Background[dev1] = new Epoch.EpochBackground(new Measurement(0, "V"), new Measurement(1000, "Hz"));
e.Background[dev2] = new Epoch.EpochBackground(new Measurement(1, "V"), new Measurement(1000, "Hz"));
e.Responses[dev1] = new Response();
e.Responses[dev2] = new Response();
var streamConfig = new Dictionary <string, object>();
streamConfig[param1] = value1;
var devConfig = new Dictionary <string, object>();
devConfig[param2] = value2;
IInputData responseData1 = new InputData(samples, srate, start)
.DataWithStreamConfiguration(stream1, streamConfig)
.DataWithExternalDeviceConfiguration(dev1, devConfig);
IInputData responseData2 = new InputData(samples, srate, start)
.DataWithStreamConfiguration(stream2, streamConfig)
.DataWithExternalDeviceConfiguration(dev2, devConfig);
e.Responses[dev1].AppendData(responseData1);
e.Responses[dev2].AppendData(responseData2);
e.Keywords.Add(kw1);
e.Keywords.Add(kw2);
exp.BeginEpochGroup("label", "source identifier", new[] { "keyword1", "keyword2" }, props, guid,
time);
exp.Serialize(e);
exp.EndEpochGroup();
exp.Close();
}
H5.Close();
Approvals.VerifyFile("..\\..\\..\\ShouldAllowNumericEpochParameters.h5");
}
protected override void WriteKeywords(Epoch epoch, ISet <string> keywords)
{
writer.WriteStartElement("keywords");
base.WriteKeywords(epoch, keywords);
writer.WriteEndElement();
}
public TimeStampedEpochEventArgs(IClock clock, Epoch epoch)
: base(clock)
{
Epoch = epoch;
}
public void ShouldPersistCompletedEpochs()
{
var c = new Controller();
bool evt = false;
c.DAQController = new TestDAQController();
c.Clock = c.DAQController as IClock;
var persistor = new FakeEpochPersistor();
c.SavedEpoch += (co, args) =>
{
evt = true;
};
var dev = new UnitConvertingExternalDevice(UNUSED_DEVICE_NAME, UNUSED_DEVICE_MANUFACTURER, UNUSED_BACKGROUND)
{
Controller = c,
MeasurementConversionTarget = "V"
};
var outStream = new DAQOutputStream("outStream")
{
MeasurementConversionTarget = "V"
};
var inStream = new DAQInputStream("inStream")
{
MeasurementConversionTarget = "V"
};
(c.DAQController as IMutableDAQController).AddStream(outStream);
(c.DAQController as IMutableDAQController).AddStream(inStream);
var srate = new Measurement(10, "Hz");
outStream.SampleRate = srate;
inStream.SampleRate = srate;
dev.BindStream(outStream);
dev.BindStream(inStream);
var e = new Epoch(UNUSED_PROTOCOL);
var samples = new List <IMeasurement> {
new Measurement(1.0m, "V"), new Measurement(1.0m, "V"), new Measurement(1.0m, "V")
};
var data = new OutputData(samples,
srate,
true);
e.Stimuli[dev] = new RenderedStimulus((string)"stimID",
(IDictionary <string, object>) new Dictionary <string, object>(),
(IOutputData)data);
e.Responses[dev] = new Response();
e.Background[dev] = new Epoch.EpochBackground(new Measurement(0, "V"), srate);
((TestDAQController)c.DAQController).AddStreamMapping(outStream, inStream);
c.RunEpoch(e, persistor);
Assert.That(evt, Is.True.After(10 * 1000, 100));
Assert.That(persistor.PersistedEpochs, Has.Member(e));
}
public void MultipleEpochs(
[Values(1000, 5000, 10000, 20000)] double sampleRate
)
{
Epoch e;
IExternalDevice dev0;
RenderedStimulus stim1;
IExternalDevice dev1;
RenderedStimulus stim2;
IList<IMeasurement> stimData;
var controller = SetupController(sampleRate, out e, out dev0, out stim1, out dev1, out stim2, out stimData, 2);
controller.RunEpoch(e, new FakeEpochPersistor());
var inputData = e.Responses[dev0].Data;
const double MAX_VOLTAGE_DIFF = 0.001;
int failures = inputData.Select((t, i) => t.QuantityInBaseUnit - stimData[i].QuantityInBaseUnit)
.Count(dif => Math.Abs(dif) > (decimal) MAX_VOLTAGE_DIFF);
Assert.AreEqual(0, failures);
e = new Epoch("LowGainSimulation");
dev0 = controller.GetDevice("Device0");
dev1 = controller.GetDevice("Device1");
var srate = new Measurement((decimal) sampleRate, "Hz");
stim1 = new RenderedStimulus((string) "RenderedStimulus",
(IDictionary<string, object>) new Dictionary<string, object>(),
(IOutputData) new OutputData(stimData, srate, false));
stim2 = new RenderedStimulus((string) "RenderedStimulus",
(IDictionary<string, object>) new Dictionary<string, object>(),
(IOutputData) new OutputData(stimData, srate, false));
e.Stimuli[dev0] = stim1;
e.Stimuli[dev1] = stim2;
e.Responses[dev0] = new Response();
e.Responses[dev1] = new Response();
e.Background[dev1] = new Epoch.EpochBackground(new Measurement(0, "V"), srate);
e.Background[dev0] = new Epoch.EpochBackground(new Measurement(0, "V"), srate);
Assert.DoesNotThrow(() => controller.RunEpoch(e, new FakeEpochPersistor()));
inputData = e.Responses[dev0].Data;
failures = inputData.Select((t, i) => t.QuantityInBaseUnit - stimData[i].QuantityInBaseUnit)
.Count(dif => Math.Abs(dif) > (decimal) MAX_VOLTAGE_DIFF);
Assert.AreEqual(0, failures);
}
public void SetCurrentEpoch(Epoch e)
{
this.EnqueueEpoch(e);
this.NextEpoch();
}
public virtual IPersistentEpoch Serialize(Epoch e)
{
((LinkedList<Epoch>)PersistedEpochs).AddLast(e);
return null;
}
protected virtual void WriteResponsesStart(Epoch e)
{
Console.WriteLine("Epoch responses start");
}