//Method for generating the Sequence scatterview item from the element menu
private void select_Sequence(object sender, RoutedEventArgs e)
{
_thisRegDS = new RegDataSheet("http://partsregistry.org/wiki/index.php?title=Part:" + this.partName.Text);
seq = new ScatterViewItem();
seq.CanRotate = false;
seq.CanScale = false;
TextBlock seqtext = new TextBlock(); //Creates a textblock to be inserted into the scatterview
seqtext.Margin = new Thickness(10);
seq.Background = Brushes.SteelBlue;
seqtext.Background = Brushes.White;
seq.Width = 800;
seq.MinHeight = 600;
seqtext.Width = 790;
seqtext.MinHeight = 590;
seqtext.Text = "Parts Registry ID: " + _thisRegDS.Name + "\n" + "\n" + "Sequence:" + "\n" + "\n" + _thisRegDS.BasicInfo.Sequence;
seq.Content = seqtext;
SurfaceWindow1.addData(sender, seq);
seq.ContainerManipulationCompleted += new ContainerManipulationCompletedEventHandler(onSeqManipulationCompleted); //Event handler that allows trashing when swiped to the right
seq.Orientation = 0;
//Overwrites center calculated in addData(); consider checking out later
Point PartCenter = this.Center;
Point OriginalCenter = seq.Center;
OriginalCenter.X = (PartCenter.X);
OriginalCenter.Y = (PartCenter.Y + 370);
seq.Center = OriginalCenter;
}
//Creates a new Part based on RegDataSheet and category; do not add duplicates
private void partFromRegDS(RegDataSheet regDS, String cat)
{
String currentPartsList = listCurrentPartsInResults();
if (!currentPartsList.Contains(regDS.Name))
{
Part p = new Part(convertType_RDSToMCP(regDS.Type));
p.myRegDS = regDS;
p.partName.Text = p.myRegDS.Name;
p.partCategory.Text = p.myRegDS.BasicInfo.DescriptionName;
L0_resultsSV.Items.Add(p);
p.Center = SurfaceWindow1.SetPosition(p);
}
}
//Constructor for searches unbounded by part types
public Part(String partType)
{
InitializeComponent();
Orientation = 0;
CanScale = false;
CanRotate = false;
_sitesList = new List <Sites> {
new Sites(), new Sites()
};
//if (sw1 != null)
//{
_type = partType;
if (_type == "prom")
{
imgType.Source = SurfaceWindow1.BitmapToImageSource(Resource1.sbol_prom2);
//Background = Brushes.Orange;
}
else if (_type == "rbs")
{
imgType.Source = SurfaceWindow1.BitmapToImageSource(Resource1.sbol_rbs2);
//Background = Brushes.DodgerBlue;
}
else if (_type == "cds")
{
imgType.Source = SurfaceWindow1.BitmapToImageSource(Resource1.sbol_cds2);
_sitesList.ElementAt(0).copySitesInfoFrom(new Sites("aatg"));
//Background = Brushes.Green;
}
else //type == "term"
{
imgType.Source = SurfaceWindow1.BitmapToImageSource(Resource1.sbol_term2);
//Background = Brushes.Red;
}
//}
//else
//{
// imgType.Source = SurfaceWindow1.BitmapToImageSource(Resource1.sbol_prom);
// this.Background = Brushes.Orange;
//}
_myRegDS = new RegDataSheet();
_progressBarWrapper = new ProgressBarWrapper(new Action(showProgressBar), new Action(hideProgressBar));
_myRegDS.BasicInfo.Sequence = "atgcatgctagcatccattacgatccgtcag";
}
//Primer Designer helper method: gets and sets data from Registry for Parts if not yet requested
//Must be accessible to L1 modules/trans. units and L2 modules/multigene constructs
//DOESN'T WORK: only seems to work when in above event handler; doesn't have a step where _regDS is returned, if _regDS was created at all
public void getDataForPrimerDesigner()
{
if (_myRegDS.Name != "test") //Already got data from registry, so don't make new one
{
}
else
{
_myRegDS = new RegDataSheet("http://partsregistry.org/wiki/index.php?title=Part:" + partName.Text);
//Func<String, RegDataSheet> _getRegDataSheet =
//delegate(String pName) { return new RegDataSheet("http://partsregistry.org/wiki/index.php?title=Part:" + pName); };
//Action<RegDataSheet> _getRegDataSheetCallback = delegate(RegDataSheet _regDS)
//{
// _myRegDS = _regDS;
//};
//_dataSheet = _progressBarWrapper.execute<String, RegDataSheet>(_getRegDataSheet, partName.Text, _getRegDataSheetCallback);
}
}
private List<RegDataSheet> regDS; //List of all the Parts Data Sheets related to the search query
#endregion Fields
#region Constructors
public Search(string query)
{
regDS = new List<RegDataSheet>();
RegList r = new RegList(query);
//goes through the links on the results page and creates a RegDataSheet from the pages
if (r.TitleLinks.Count != 0)
{
if (r.TitleLinks[0] != "-1")
{
for (int i = 0; i < r.TitleLinks.Count; i++)
{
RegDataSheet reg = new RegDataSheet(r.TitleLinks[i]);
regDS.Add(reg);
}
}
}
if (r.TextLinks.Count != 0)
{
if (r.TextLinks[0] != "-1")
{
for (int i = 0; i < r.TextLinks.Count; i++)
{
RegDataSheet reg = new RegDataSheet(r.TextLinks[i]);
regDS.Add(reg);
//Console.WriteLine(i + ": " + r.TextLinks[i]);
}
}
}
////Creates a list of PubMed source related to the query
//PubList p = new PubList(query);
//pubMedTitles = p.Titles;
//pubMedLinks = p.Links;
}
//Copies properties from the source Part to the receiver
public void copyPartInfoFrom(Part source)
{
try
{
partName.Text = source.partName.Text;
partCategory.Text = source.partCategory.Text;
imgType.Source = source.imgType.Source;
//Background = source.Background;
_type = source._type;
_myRegDS = source._myRegDS;
_sitesList.Clear();
foreach (Sites s in source._sitesList)
{
_sitesList.Add(new Sites(s.Sequence));
}
//_sitesList = source._sitesList;
Opacity = source.Opacity;
mySource = source;
}
catch (Exception exc) { Console.WriteLine(exc); }
}
public Search(string query)
{
regDS = new List <RegDataSheet>();
RegList r = new RegList(query);
//goes through the links on the results page and creates a RegDataSheet from the pages
if (r.TitleLinks.Count != 0)
{
if (r.TitleLinks[0] != "-1")
{
for (int i = 0; i < r.TitleLinks.Count; i++)
{
RegDataSheet reg = new RegDataSheet(r.TitleLinks[i]);
regDS.Add(reg);
}
}
}
if (r.TextLinks.Count != 0)
{
if (r.TextLinks[0] != "-1")
{
for (int i = 0; i < r.TextLinks.Count; i++)
{
RegDataSheet reg = new RegDataSheet(r.TextLinks[i]);
regDS.Add(reg);
//Console.WriteLine(i + ": " + r.TextLinks[i]);
}
}
}
////Creates a list of PubMed source related to the query
//PubList p = new PubList(query);
//pubMedTitles = p.Titles;
//pubMedLinks = p.Links;
}
private void select_DataSheet(object sender, RoutedEventArgs e)
{
//try
//{
//_thisRegDS = new RegDataSheet("http://partsregistry.org/wiki/index.php?title=Part:" + this.partName.Text);
ds = new MenuDataSheet();
ds.ContainerManipulationCompleted += new ContainerManipulationCompletedEventHandler(onDSManipulationCompleted);
if (_myRegDS.Name != "test") //Already got data from registry, so just populate from it
{
#region Populating the data sheet's datasheet
//Specifies the Length of the Sequence on the Sequence tab of the data sheet
int Length = _myRegDS.BasicInfo.Length;
TextBlock LengthBlock = new TextBlock();
//ds.SeqTab.Children.Add(LengthBlock);
LengthBlock.VerticalAlignment = VerticalAlignment.Top;
LengthBlock.Text = "Length: " + Length.ToString();
//This is all pulling information from the Reg Data Sheet associated with the part and inserting it in the data sheet
ds.PopulateDataSheet(_myRegDS.Name, 0, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.BasicInfo.DescriptionName, 1, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.Type, 2, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.Promoter.getReg(), 3, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.BasicInfo.Availability, 4, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.BasicInfo.Usefulness, 5, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.Description.assembCompString(), 6, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.Description.chassisString(), 7, 1, ds.DataSheet, "datasheet");
//Specific to sequence tab
ds.PopulateDataSheet(_myRegDS.BasicInfo.Sequence, 1, 1, ds.SeqTab, "seq");
ds.PopulateDataSheet(Length.ToString(), 0, 1, ds.SeqTab, "length");
//Specific to AuthorInfo Tab
ds.PopulateDataSheet(_myRegDS.Reference.Author, 0, 1, ds.AuthorInfo, "author");
ds.PopulateDataSheet(_myRegDS.Reference.Group, 1, 1, ds.AuthorInfo, "author");
ds.PopulateDataSheet(_myRegDS.Reference.Date, 2, 1, ds.AuthorInfo, "author");
if (_myRegDS.Type == "rbs")
{
RowDefinition rowDef1 = new RowDefinition();
ds.DataSheet.RowDefinitions.Add(rowDef1);
ds.PopulateDataSheet(_myRegDS.Rbs.FamilyName, 8, 1, ds.DataSheet);
TextBlock RBSFam = new TextBlock();
RBSFam.Text = "Family";
ds.DataSheet.Children.Add(RBSFam);
Grid.SetRow(RBSFam, 8);
}
else if (_myRegDS.Type == "terminator")
{
RowDefinition rowDef1 = new RowDefinition();
RowDefinition rowDef2 = new RowDefinition();
RowDefinition rowDef3 = new RowDefinition();
RowDefinition rowDef4 = new RowDefinition();
ds.DataSheet.RowDefinitions.Add(rowDef1);
ds.DataSheet.RowDefinitions.Add(rowDef2);
ds.DataSheet.RowDefinitions.Add(rowDef3);
ds.DataSheet.RowDefinitions.Add(rowDef4);
TextBlock Direction = new TextBlock();
Direction.Text = "Direction";
Direction.FontSize = 18;
ds.DataSheet.Children.Add(Direction);
Grid.SetRow(Direction, 8);
ds.PopulateDataSheet(_myRegDS.Terminators.Direction, 8, 1, ds.DataSheet);
ds.PopulateDataSheet(_myRegDS.Terminators.ForwardEff, 9, 1, ds.DataSheet);
ds.PopulateDataSheet(_myRegDS.Terminators.ReversedEff, 10, 1, ds.DataSheet);
ds.PopulateDataSheet(_myRegDS.Terminators.ReversedVers, 11, 1, ds.DataSheet);
}
#endregion
#region Populating Publications
Func <String, PubList> _GetPublications =
delegate(String id) { return(new PubList(id)); };
Action <PubList> callback = delegate(PubList result)
{
//_thisRegDS = new RegDataSheet("http://partsregistry.org/wiki/index.php?title=Part:" + this.partName.Text);
int m = 0;
if (result.Titles.Count == 0)
{
int Count = result.Titles.Count;
SurfaceListBoxItem NoResults = new SurfaceListBoxItem();
TextBlock Content = new TextBlock();
Content.Text = "No Results Found";
NoResults.Content = Content;
ds.Publictions.Items.Add(NoResults);
}
if (result.Titles.Count > 0)
{
int TotalArticles = result.Titles.Count;
SurfaceListBoxItem ArticleCount = new SurfaceListBoxItem();
TextBlock CountContent = new TextBlock();
CountContent.Text = "Results Found: " + TotalArticles as string;
ArticleCount.Content = CountContent;
ds.Publictions.Items.Add(ArticleCount);
}
foreach (String Titles in result.Titles)
{
//To Test if titles are actually adding
SurfaceListBoxItem item = new SurfaceListBoxItem();
TextBlock PubTitles = new TextBlock();
item.Selected += new RoutedEventHandler(item_Selected);
item.Content = Titles;
PubTitles.Tag = result.Links.ElementAt(m);
//item.Tag = result.Authors.ElementAt(m);
ds.Publictions.Items.Add(item);
RowDefinition rowDef1 = new RowDefinition();
RowDefinition rowDef2 = new RowDefinition();
RowDefinition rowDef3 = new RowDefinition();
RowDefinition rowDef4 = new RowDefinition();
abs = new PubAbstract(PubTitles.Tag as string, result.getAuthors());
item.Tag = "Title: " + item.Content as string + "\r\n" + "\r\n" + "\r\n"
+ "Authors: " + result.Authors.ElementAt(m) as string + "\r\n" + "\r\n"
+ "Abstract:" + "\r\n" + "\r\n"
+ abs.getAbstract() as string;
m += 1;
Console.WriteLine(m);
if (m > 20)
{
break;
}
}
/*foreach (String Titles in result.Titles)
* {
* TextBlock Middle = new TextBlock();
* Middle.Text = Titles;
* //ds.Publications.Children.Add(Middle);
* Grid.SetRow(Middle, m);
* m += 1;
#endregion
* //publications location maybe
* //Creates a list of PubMed source related to the query
*
* }*/
};
_Publist = _progressBarWrapper.execute <String, PubList>(_GetPublications, _myRegDS.BasicInfo.DescriptionName, callback);
#endregion
SurfaceWindow1.addData(sender, ds);
}
else
{
Func <String, RegDataSheet> _getRegDataSheet =
delegate(String pName) { return(new RegDataSheet("http://partsregistry.org/wiki/index.php?title=Part:" + pName)); };
Action <RegDataSheet> _getRegDataSheetCallback = delegate(RegDataSheet _regDS)
{
_myRegDS = _regDS;
#region Populating the data sheet's datasheet
//Specifies the Length of the Sequence on the Sequence tab of the data sheet
int Length = _myRegDS.BasicInfo.Length;
TextBlock LengthBlock = new TextBlock();
//ds.SeqTab.Children.Add(LengthBlock);
LengthBlock.VerticalAlignment = VerticalAlignment.Top;
LengthBlock.Text = "Length: " + Length.ToString();
//This is all pulling information from the Reg Data Sheet associated with the part and inserting it in the data sheet
ds.PopulateDataSheet(_myRegDS.Name, 0, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.BasicInfo.DescriptionName, 1, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.Type, 2, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.Promoter.getReg(), 3, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.BasicInfo.Availability, 4, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.BasicInfo.Usefulness, 5, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.Description.assembCompString(), 6, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.Description.chassisString(), 7, 1, ds.DataSheet, "datasheet");
//Specific to sequence tab
ds.PopulateDataSheet(_myRegDS.BasicInfo.Sequence, 1, 1, ds.SeqTab, "seq");
ds.PopulateDataSheet(Length.ToString(), 0, 1, ds.SeqTab, "length");
//Specific to AuthorInfo Tab
ds.PopulateDataSheet(_myRegDS.Reference.Author, 0, 1, ds.AuthorInfo, "author");
ds.PopulateDataSheet(_myRegDS.Reference.Group, 1, 1, ds.AuthorInfo, "author");
ds.PopulateDataSheet(_myRegDS.Reference.Date, 2, 1, ds.AuthorInfo, "author");
if (_myRegDS.Type == "rbs")
{
RowDefinition rowDef1 = new RowDefinition();
ds.DataSheet.RowDefinitions.Add(rowDef1);
ds.PopulateDataSheet(_myRegDS.Rbs.FamilyName, 8, 1, ds.DataSheet);
TextBlock RBSFam = new TextBlock();
RBSFam.Text = "Family";
RBSFam.FontSize = 14;
RBSFam.FontWeight = FontWeights.Bold;
RBSFam.VerticalAlignment = VerticalAlignment.Top;
// COME BACK TO THIS LATER
ds.DataSheet.Children.Add(RBSFam);
Grid.SetRow(RBSFam, 8);
}
else if (_myRegDS.Type == "terminator")
{
RowDefinition rowDef1 = new RowDefinition();
RowDefinition rowDef2 = new RowDefinition();
RowDefinition rowDef3 = new RowDefinition();
RowDefinition rowDef4 = new RowDefinition();
ds.DataSheet.RowDefinitions.Add(rowDef1);
ds.DataSheet.RowDefinitions.Add(rowDef2);
ds.DataSheet.RowDefinitions.Add(rowDef3);
ds.DataSheet.RowDefinitions.Add(rowDef4);
TextBlock Direction = new TextBlock();
Direction.Text = "Direction";
Direction.FontSize = 18;
ds.DataSheet.Children.Add(Direction);
Grid.SetRow(Direction, 8);
ds.PopulateDataSheet(_myRegDS.Terminators.Direction, 8, 1, ds.DataSheet);
ds.PopulateDataSheet(_myRegDS.Terminators.ForwardEff, 9, 1, ds.DataSheet);
ds.PopulateDataSheet(_myRegDS.Terminators.ReversedEff, 10, 1, ds.DataSheet);
ds.PopulateDataSheet(_myRegDS.Terminators.ReversedVers, 11, 1, ds.DataSheet);
}
#endregion
#region Populating Publications
Func <String, PubList> _GetPublications =
delegate(String id) { return(new PubList(id)); };
Action <PubList> callback = delegate(PubList result)
{
//_thisRegDS = new RegDataSheet("http://partsregistry.org/wiki/index.php?title=Part:" + this.partName.Text);
int m = 0;
if (result.Titles.Count == 0)
{
int Count = result.Titles.Count;
SurfaceListBoxItem NoResults = new SurfaceListBoxItem();
TextBlock Content = new TextBlock();
Content.Text = "No Results Found";
NoResults.Content = Content;
ds.Publictions.Items.Add(NoResults);
}
if (result.Titles.Count > 0)
{
int TotalArticles = result.Titles.Count;
SurfaceListBoxItem ArticleCount = new SurfaceListBoxItem();
TextBlock CountContent = new TextBlock();
CountContent.Text = "Results Found: " + TotalArticles as string;
ArticleCount.Content = CountContent;
ds.Publictions.Items.Add(ArticleCount);
}
foreach (String Titles in result.Titles)
{
//To Test if titles are actually adding
SurfaceListBoxItem item = new SurfaceListBoxItem();
TextBlock PubTitles = new TextBlock();
item.Selected += new RoutedEventHandler(item_Selected);
item.Content = Titles;
PubTitles.Tag = result.Links.ElementAt(m);
//item.Tag = result.Authors.ElementAt(m);
ds.Publictions.Items.Add(item);
RowDefinition rowDef1 = new RowDefinition();
RowDefinition rowDef2 = new RowDefinition();
RowDefinition rowDef3 = new RowDefinition();
RowDefinition rowDef4 = new RowDefinition();
abs = new PubAbstract(PubTitles.Tag as string, result.getAuthors());
item.Tag = "Title: " + item.Content as string + "\r\n" + "\r\n" + "\r\n"
+ "Authors: " + result.Authors.ElementAt(m) as string + "\r\n" + "\r\n"
+ "Abstract:" + "\r\n" + "\r\n"
+ abs.getAbstract() as string;
m += 1;
Console.WriteLine(m);
if (m > 20)
{
break;
}
}
/*foreach (String Titles in result.Titles)
* {
* TextBlock Middle = new TextBlock();
* Middle.Text = Titles;
* //ds.Publications.Children.Add(Middle);
* Grid.SetRow(Middle, m);
* m += 1;
#endregion
* //publications location maybe
* //Creates a list of PubMed source related to the query
*
* }*/
};
_Publist = _progressBarWrapper.execute <String, PubList>(_GetPublications, _myRegDS.BasicInfo.DescriptionName, callback);
#endregion
SurfaceWindow1.addData(sender, ds);
};
_dataSheet = _progressBarWrapper.execute <String, RegDataSheet>(_getRegDataSheet, partName.Text, _getRegDataSheetCallback);
}
}
//Constructor for searches unbounded by part types
public Part(String partType)
{
InitializeComponent();
Orientation = 0;
CanScale = false;
CanRotate = false;
_sitesList = new List<Sites>{new Sites(), new Sites()};
//if (sw1 != null)
//{
_type = partType;
if (_type == "prom")
{
imgType.Source = SurfaceWindow1.BitmapToImageSource(Resource1.sbol_prom2);
//Background = Brushes.Orange;
}
else if (_type == "rbs")
{
imgType.Source = SurfaceWindow1.BitmapToImageSource(Resource1.sbol_rbs2);
//Background = Brushes.DodgerBlue;
}
else if (_type == "cds")
{
imgType.Source = SurfaceWindow1.BitmapToImageSource(Resource1.sbol_cds2);
_sitesList.ElementAt(0).copySitesInfoFrom(new Sites("aatg"));
//Background = Brushes.Green;
}
else //type == "term"
{
imgType.Source = SurfaceWindow1.BitmapToImageSource(Resource1.sbol_term2);
//Background = Brushes.Red;
}
//}
//else
//{
// imgType.Source = SurfaceWindow1.BitmapToImageSource(Resource1.sbol_prom);
// this.Background = Brushes.Orange;
//}
_myRegDS = new RegDataSheet();
_progressBarWrapper = new ProgressBarWrapper(new Action(showProgressBar), new Action(hideProgressBar));
_myRegDS.BasicInfo.Sequence = "atgcatgctagcatccattacgatccgtcag";
}
//Copies properties from the source Part to the receiver
public void copyPartInfoFrom(Part source)
{
try
{
partName.Text = source.partName.Text;
partCategory.Text = source.partCategory.Text;
imgType.Source = source.imgType.Source;
//Background = source.Background;
_type = source._type;
_myRegDS = source._myRegDS;
_sitesList.Clear();
foreach (Sites s in source._sitesList)
{
_sitesList.Add(new Sites(s.Sequence));
}
//_sitesList = source._sitesList;
Opacity = source.Opacity;
mySource = source;
}
catch (Exception exc) { Console.WriteLine(exc); }
}
private void select_DataSheet(object sender, RoutedEventArgs e)
{
//try
//{
//_thisRegDS = new RegDataSheet("http://partsregistry.org/wiki/index.php?title=Part:" + this.partName.Text);
ds = new MenuDataSheet();
ds.ContainerManipulationCompleted += new ContainerManipulationCompletedEventHandler(onDSManipulationCompleted);
if (_myRegDS.Name != "test") //Already got data from registry, so just populate from it
{
#region Populating the data sheet's datasheet
//Specifies the Length of the Sequence on the Sequence tab of the data sheet
int Length = _myRegDS.BasicInfo.Length;
TextBlock LengthBlock = new TextBlock();
//ds.SeqTab.Children.Add(LengthBlock);
LengthBlock.VerticalAlignment = VerticalAlignment.Top;
LengthBlock.Text = "Length: " + Length.ToString();
//This is all pulling information from the Reg Data Sheet associated with the part and inserting it in the data sheet
ds.PopulateDataSheet(_myRegDS.Name, 0, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.BasicInfo.DescriptionName, 1, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.Type, 2, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.Promoter.getReg(), 3, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.BasicInfo.Availability, 4, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.BasicInfo.Usefulness, 5, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.Description.assembCompString(), 6, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.Description.chassisString(), 7, 1, ds.DataSheet, "datasheet");
//Specific to sequence tab
ds.PopulateDataSheet(_myRegDS.BasicInfo.Sequence, 1, 1, ds.SeqTab, "seq");
ds.PopulateDataSheet(Length.ToString(), 0, 1, ds.SeqTab, "length");
//Specific to AuthorInfo Tab
ds.PopulateDataSheet(_myRegDS.Reference.Author, 0, 1, ds.AuthorInfo, "author");
ds.PopulateDataSheet(_myRegDS.Reference.Group, 1, 1, ds.AuthorInfo, "author");
ds.PopulateDataSheet(_myRegDS.Reference.Date, 2, 1, ds.AuthorInfo, "author");
if (_myRegDS.Type == "rbs")
{
RowDefinition rowDef1 = new RowDefinition();
ds.DataSheet.RowDefinitions.Add(rowDef1);
ds.PopulateDataSheet(_myRegDS.Rbs.FamilyName, 8, 1, ds.DataSheet);
TextBlock RBSFam = new TextBlock();
RBSFam.Text = "Family";
ds.DataSheet.Children.Add(RBSFam);
Grid.SetRow(RBSFam, 8);
}
else if (_myRegDS.Type == "terminator")
{
RowDefinition rowDef1 = new RowDefinition();
RowDefinition rowDef2 = new RowDefinition();
RowDefinition rowDef3 = new RowDefinition();
RowDefinition rowDef4 = new RowDefinition();
ds.DataSheet.RowDefinitions.Add(rowDef1);
ds.DataSheet.RowDefinitions.Add(rowDef2);
ds.DataSheet.RowDefinitions.Add(rowDef3);
ds.DataSheet.RowDefinitions.Add(rowDef4);
TextBlock Direction = new TextBlock();
Direction.Text = "Direction";
Direction.FontSize = 18;
ds.DataSheet.Children.Add(Direction);
Grid.SetRow(Direction, 8);
ds.PopulateDataSheet(_myRegDS.Terminators.Direction, 8, 1, ds.DataSheet);
ds.PopulateDataSheet(_myRegDS.Terminators.ForwardEff, 9, 1, ds.DataSheet);
ds.PopulateDataSheet(_myRegDS.Terminators.ReversedEff, 10, 1, ds.DataSheet);
ds.PopulateDataSheet(_myRegDS.Terminators.ReversedVers, 11, 1, ds.DataSheet);
}
#endregion
#region Populating Publications
Func<String, PubList> _GetPublications =
delegate(String id) { return new PubList(id); };
Action<PubList> callback = delegate(PubList result)
{
//_thisRegDS = new RegDataSheet("http://partsregistry.org/wiki/index.php?title=Part:" + this.partName.Text);
int m = 0;
if (result.Titles.Count == 0)
{
int Count = result.Titles.Count;
SurfaceListBoxItem NoResults = new SurfaceListBoxItem();
TextBlock Content = new TextBlock();
Content.Text = "No Results Found";
NoResults.Content = Content;
ds.Publictions.Items.Add(NoResults);
}
if (result.Titles.Count > 0)
{
int TotalArticles = result.Titles.Count;
SurfaceListBoxItem ArticleCount = new SurfaceListBoxItem();
TextBlock CountContent = new TextBlock();
CountContent.Text = "Results Found: " + TotalArticles as string;
ArticleCount.Content = CountContent;
ds.Publictions.Items.Add(ArticleCount);
}
foreach (String Titles in result.Titles)
{
//To Test if titles are actually adding
SurfaceListBoxItem item = new SurfaceListBoxItem();
TextBlock PubTitles = new TextBlock();
item.Selected += new RoutedEventHandler(item_Selected);
item.Content = Titles;
PubTitles.Tag = result.Links.ElementAt(m);
//item.Tag = result.Authors.ElementAt(m);
ds.Publictions.Items.Add(item);
RowDefinition rowDef1 = new RowDefinition();
RowDefinition rowDef2 = new RowDefinition();
RowDefinition rowDef3 = new RowDefinition();
RowDefinition rowDef4 = new RowDefinition();
abs = new PubAbstract(PubTitles.Tag as string, result.getAuthors());
item.Tag = "Title: " + item.Content as string + "\r\n" + "\r\n" + "\r\n"
+ "Authors: " + result.Authors.ElementAt(m) as string + "\r\n" + "\r\n"
+ "Abstract:" + "\r\n" + "\r\n"
+ abs.getAbstract() as string;
m += 1;
Console.WriteLine(m);
if (m > 20)
break;
}
/*foreach (String Titles in result.Titles)
{
TextBlock Middle = new TextBlock();
Middle.Text = Titles;
//ds.Publications.Children.Add(Middle);
Grid.SetRow(Middle, m);
m += 1;
#endregion
//publications location maybe
//Creates a list of PubMed source related to the query
}*/
};
_Publist = _progressBarWrapper.execute<String, PubList>(_GetPublications, _myRegDS.BasicInfo.DescriptionName, callback);
#endregion
SurfaceWindow1.addData(sender, ds);
}
else
{
Func<String, RegDataSheet> _getRegDataSheet =
delegate(String pName) { return new RegDataSheet("http://partsregistry.org/wiki/index.php?title=Part:" + pName); };
Action<RegDataSheet> _getRegDataSheetCallback = delegate(RegDataSheet _regDS)
{
_myRegDS = _regDS;
#region Populating the data sheet's datasheet
//Specifies the Length of the Sequence on the Sequence tab of the data sheet
int Length = _myRegDS.BasicInfo.Length;
TextBlock LengthBlock = new TextBlock();
//ds.SeqTab.Children.Add(LengthBlock);
LengthBlock.VerticalAlignment = VerticalAlignment.Top;
LengthBlock.Text = "Length: " + Length.ToString();
//This is all pulling information from the Reg Data Sheet associated with the part and inserting it in the data sheet
ds.PopulateDataSheet(_myRegDS.Name, 0, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.BasicInfo.DescriptionName, 1, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.Type, 2, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.Promoter.getReg(), 3, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.BasicInfo.Availability, 4, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.BasicInfo.Usefulness, 5, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.Description.assembCompString(), 6, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.Description.chassisString(), 7, 1, ds.DataSheet, "datasheet");
//Specific to sequence tab
ds.PopulateDataSheet(_myRegDS.BasicInfo.Sequence, 1, 1, ds.SeqTab, "seq");
ds.PopulateDataSheet(Length.ToString(), 0, 1, ds.SeqTab, "length");
//Specific to AuthorInfo Tab
ds.PopulateDataSheet(_myRegDS.Reference.Author, 0, 1, ds.AuthorInfo, "author");
ds.PopulateDataSheet(_myRegDS.Reference.Group, 1, 1, ds.AuthorInfo, "author");
ds.PopulateDataSheet(_myRegDS.Reference.Date, 2, 1, ds.AuthorInfo, "author");
if (_myRegDS.Type == "rbs")
{
RowDefinition rowDef1 = new RowDefinition();
ds.DataSheet.RowDefinitions.Add(rowDef1);
ds.PopulateDataSheet(_myRegDS.Rbs.FamilyName, 8, 1, ds.DataSheet);
TextBlock RBSFam = new TextBlock();
RBSFam.Text = "Family";
RBSFam.FontSize= 14;
RBSFam.FontWeight = FontWeights.Bold;
RBSFam.VerticalAlignment = VerticalAlignment.Top;
// COME BACK TO THIS LATER
ds.DataSheet.Children.Add(RBSFam);
Grid.SetRow(RBSFam, 8);
}
else if (_myRegDS.Type == "terminator")
{
RowDefinition rowDef1 = new RowDefinition();
RowDefinition rowDef2 = new RowDefinition();
RowDefinition rowDef3 = new RowDefinition();
RowDefinition rowDef4 = new RowDefinition();
ds.DataSheet.RowDefinitions.Add(rowDef1);
ds.DataSheet.RowDefinitions.Add(rowDef2);
ds.DataSheet.RowDefinitions.Add(rowDef3);
ds.DataSheet.RowDefinitions.Add(rowDef4);
TextBlock Direction = new TextBlock();
Direction.Text = "Direction";
Direction.FontSize = 18;
ds.DataSheet.Children.Add(Direction);
Grid.SetRow(Direction, 8);
ds.PopulateDataSheet(_myRegDS.Terminators.Direction, 8, 1, ds.DataSheet);
ds.PopulateDataSheet(_myRegDS.Terminators.ForwardEff, 9, 1, ds.DataSheet);
ds.PopulateDataSheet(_myRegDS.Terminators.ReversedEff, 10, 1, ds.DataSheet);
ds.PopulateDataSheet(_myRegDS.Terminators.ReversedVers, 11, 1, ds.DataSheet);
}
#endregion
#region Populating Publications
Func<String, PubList> _GetPublications =
delegate(String id) { return new PubList(id); };
Action<PubList> callback = delegate(PubList result)
{
//_thisRegDS = new RegDataSheet("http://partsregistry.org/wiki/index.php?title=Part:" + this.partName.Text);
int m = 0;
if (result.Titles.Count == 0)
{
int Count = result.Titles.Count;
SurfaceListBoxItem NoResults = new SurfaceListBoxItem();
TextBlock Content = new TextBlock();
Content.Text = "No Results Found";
NoResults.Content = Content;
ds.Publictions.Items.Add(NoResults);
}
if (result.Titles.Count > 0)
{
int TotalArticles = result.Titles.Count;
SurfaceListBoxItem ArticleCount = new SurfaceListBoxItem();
TextBlock CountContent = new TextBlock();
CountContent.Text = "Results Found: " + TotalArticles as string;
ArticleCount.Content = CountContent;
ds.Publictions.Items.Add(ArticleCount);
}
foreach (String Titles in result.Titles)
{
//To Test if titles are actually adding
SurfaceListBoxItem item = new SurfaceListBoxItem();
TextBlock PubTitles = new TextBlock();
item.Selected += new RoutedEventHandler(item_Selected);
item.Content = Titles;
PubTitles.Tag = result.Links.ElementAt(m);
//item.Tag = result.Authors.ElementAt(m);
ds.Publictions.Items.Add(item);
RowDefinition rowDef1 = new RowDefinition();
RowDefinition rowDef2 = new RowDefinition();
RowDefinition rowDef3 = new RowDefinition();
RowDefinition rowDef4 = new RowDefinition();
abs = new PubAbstract(PubTitles.Tag as string, result.getAuthors());
item.Tag = "Title: " + item.Content as string + "\r\n" + "\r\n" + "\r\n"
+ "Authors: " + result.Authors.ElementAt(m) as string + "\r\n" + "\r\n"
+ "Abstract:" + "\r\n" + "\r\n"
+ abs.getAbstract() as string;
m += 1;
Console.WriteLine(m);
if (m > 20)
break;
}
/*foreach (String Titles in result.Titles)
{
TextBlock Middle = new TextBlock();
Middle.Text = Titles;
//ds.Publications.Children.Add(Middle);
Grid.SetRow(Middle, m);
m += 1;
#endregion
//publications location maybe
//Creates a list of PubMed source related to the query
}*/
};
_Publist = _progressBarWrapper.execute<String, PubList>(_GetPublications, _myRegDS.BasicInfo.DescriptionName, callback);
#endregion
SurfaceWindow1.addData(sender, ds);
};
_dataSheet = _progressBarWrapper.execute<String, RegDataSheet>(_getRegDataSheet, partName.Text, _getRegDataSheetCallback);
}
}
//Primer Designer helper method: gets and sets data from Registry for Parts if not yet requested
//Must be accessible to L1 modules/trans. units and L2 modules/multigene constructs
//DOESN'T WORK: only seems to work when in above event handler; doesn't have a step where _regDS is returned, if _regDS was created at all
public void getDataForPrimerDesigner()
{
if (_myRegDS.Name != "test") //Already got data from registry, so don't make new one
{
}
else
{
_myRegDS = new RegDataSheet("http://partsregistry.org/wiki/index.php?title=Part:" + partName.Text);
//Func<String, RegDataSheet> _getRegDataSheet =
//delegate(String pName) { return new RegDataSheet("http://partsregistry.org/wiki/index.php?title=Part:" + pName); };
//Action<RegDataSheet> _getRegDataSheetCallback = delegate(RegDataSheet _regDS)
//{
// _myRegDS = _regDS;
//};
//_dataSheet = _progressBarWrapper.execute<String, RegDataSheet>(_getRegDataSheet, partName.Text, _getRegDataSheetCallback);
}
}
//Method for generating the Sequence scatterview item from the element menu
private void select_Sequence(object sender, RoutedEventArgs e)
{
_thisRegDS = new RegDataSheet("http://partsregistry.org/wiki/index.php?title=Part:" + this.partName.Text);
seq = new ScatterViewItem();
seq.CanRotate = false;
seq.CanScale = false;
TextBlock seqtext = new TextBlock(); //Creates a textblock to be inserted into the scatterview
seqtext.Margin = new Thickness(10);
seq.Background = Brushes.SteelBlue;
seqtext.Background = Brushes.White;
seq.Width = 800;
seq.MinHeight = 600;
seqtext.Width = 790;
seqtext.MinHeight = 590;
seqtext.Text = "Parts Registry ID: " + _thisRegDS.Name + "\n" + "\n" + "Sequence:" + "\n" + "\n" + _thisRegDS.BasicInfo.Sequence;
seq.Content = seqtext;
SurfaceWindow1.addData(sender, seq);
seq.ContainerManipulationCompleted += new ContainerManipulationCompletedEventHandler(onSeqManipulationCompleted); //Event handler that allows trashing when swiped to the right
seq.Orientation = 0;
//Overwrites center calculated in addData(); consider checking out later
Point PartCenter = this.Center;
Point OriginalCenter = seq.Center;
OriginalCenter.X = (PartCenter.X);
OriginalCenter.Y = (PartCenter.Y + 370);
seq.Center = OriginalCenter;
}
