public static void SM()
{
var sequence = "AC TGTTTT";
var profile = new Profile();
profile.AddSequence("GGGGACTG", 0);
var sm = new SmithWaterman(profile, sequence);
sm.InsertionScore = -2;
sm.DeletionScore = -2;
sm.MismatchScore = -1;
sm.MatchScore = 2;
sm.Calculate();
sm.PrintResult();
var seq = sm.GetBest();
foreach (var i in seq)
{
Console.Write(string.Format("({0},{1}) ", i.Item1, i.Item2));
}
}
public static void ProfileTest()
{
var profile = new Profile();
while (true)
{
var sequence = Console.ReadLine();
var begin = int.Parse(Console.ReadLine());
profile.AddSequence(sequence, begin);
Console.WriteLine(profile);
}
}