public override void ConvertFrom(BuildSummaryOptions result)
{
base.ConvertFrom(result);
this.PathNameBin.Clear();
var dsList = result.DatasetList.Where(m => m.Enabled).ToList();
if (dsList.Count == 0)
{
return;
}
foreach (var ds1 in dsList)
{
if (ds1 is SequestDatasetOptions)
{
continue;
}
throw new Exception(MyConvert.Format("The data set {0} is not Sequest data set.", ds1.Name));
}
SequestDatasetOptions ds = dsList[0] as SequestDatasetOptions;
this.FilterByXcorr = ds.FilterByXcorr;
this.FilterByDeltaCn = ds.FilterByDeltaCn;
this.FilterBySpRank = ds.FilterBySpRank;
this.MaxModificationDeltaCn = ds.MaxModificationDeltaCn;
this.MaxSpRank = ds.MaxSpRank;
this.MinDeltaCn = ds.MinDeltaCn;
this.MinXcorr1 = ds.MinXcorr1;
this.MinXcorr2 = ds.MinXcorr2;
this.MinXcorr3 = ds.MinXcorr3;
foreach (SequestDatasetOptions ds2 in dsList)
{
foreach (var file in ds2.PathNames)
{
this.PathNameBin[file] = ds2.Name;
}
}
}
public void Test()
{
var option = new SequestDatasetOptions()
{
MinDeltaCn = 0.1,
FilterByDeltaCn = true,
FilterByPrecursor = true,
FilterBySpRank = true,
FilterByXcorr = true,
PathNames = new string[] { "111", "222" }.ToList(),
PrecursorPPMTolerance = 0.5,
MaxSpRank = 4,
MinXcorr1 = 1.9,
MinXcorr2 = 2.2,
MinXcorr3 = 3.75,
SkipSamePeptideButDifferentModificationSite = true,
MaxModificationDeltaCn = 0.08
};
XElement root = new XElement("Root");
option.Save(root);
//Console.WriteLine(root);
var target = new SequestDatasetOptions();
target.Load(root);
Assert.AreEqual(option.MinDeltaCn, target.MinDeltaCn);
Assert.AreEqual(option.FilterByDeltaCn, target.FilterByDeltaCn);
Assert.AreEqual(option.FilterByPrecursor, target.FilterByPrecursor);
Assert.AreEqual(option.FilterBySpRank, target.FilterBySpRank);
Assert.AreEqual(option.FilterByXcorr, target.FilterByXcorr);
Assert.AreEqual(option.PathNames.ToArray().ToString(), target.PathNames.ToArray().ToString());
Assert.AreEqual(option.PrecursorPPMTolerance, target.PrecursorPPMTolerance);
Assert.AreEqual(option.MaxSpRank, target.MaxSpRank);
Assert.AreEqual(option.MinXcorr1, target.MinXcorr1);
Assert.AreEqual(option.MinXcorr2, target.MinXcorr2);
Assert.AreEqual(option.MinXcorr3, target.MinXcorr3);
}
