public override IsobaricResult ReadFromFile(string fileName)
{
IsobaricResult result = new IsobaricResult();
result.PlexType = IsobaricScanXmlUtils.GetIsobaricType(fileName);
result.UsedChannels = IsobaricScanXmlUtils.GetUsedChannels(fileName, result.PlexType);
result.Comments = IsobaricScanXmlUtils.GetComments(fileName);
using (var reader = new IsobaricResultXmlFormatReader())
{
reader.Progress = this.Progress;
reader.ReadReporters = this.HasReporters && result.UsedChannels != null;
reader.ReadPeaks = this.ReadPeaks;
reader.Accept = this.Accept;
reader.OpenFile(fileName);
IsobaricScan item;
while (null != (item = reader.Next(result.UsedChannels)))
{
result.Add(item);
}
}
return(result);
}
protected IsobaricLabelingExperimentalDesign GetStatisticOption()
{
var option = new IsobaricLabelingExperimentalDesign();
option.DatasetMap = pnlClassification.GetClassificationSet();
option.IsobaricFile = iTraqFile.FullName;
option.References = GetReferenceFuncs();
option.PlexType = IsobaricScanXmlUtils.GetIsobaricType(txtIsobaricXmlFile.Text);
return(option);
}
private void txtXmlFile_TextChanged(object sender, EventArgs e)
{
if (File.Exists(txtIsobaricXmlFile.Text))
{
try
{
refChannels.PlexType = IsobaricScanXmlUtils.GetIsobaricType(txtIsobaricXmlFile.Text);
}
catch (Exception ex)
{
MessageBox.Show(this, string.Format("Failed to get isobaric type from {0}, error: {1}", txtIsobaricXmlFile.Text, ex.Message));
}
}
}