public TicGenerator(Run run, SpectrumCache spectrumCache)
{
this.run = run;
this.spectrumCache = spectrumCache;
spectrumExtractor = new SpectrumExtractor(run, spectrumCache);
ticCache = new TicCache();
}
public AveragedSpectrumExtractor(Run run, SpectrumCache spectrumCache)
{
this.run = run;
this.spectrumCache = spectrumCache;
rtToTimePointConverter = new RtToTimePointConverter(run, spectrumCache);
spectrumExtractor = new SpectrumExtractor(run, spectrumCache);
}
public void MyTestInitialize()
{
dataFile = new MSDataFile(Properties.Settings.Default.mzXMLTestFile1);
spectrumCache = new SpectrumCache();
spectrumExtractor = new SpectrumExtractor(dataFile.run, spectrumCache);
timer = new Stopwatch();
}
public void Open(string fileName, int sampleIndex)
{
if (_currentSampleIndex != sampleIndex || _currentFileName != fileName)
{
MSDataList msdList = new MSDataList();
ReaderList.FullReaderList.read(fileName, msdList);
_dataFile = msdList[0];
_run = _dataFile.run;
_currentFileName = fileName;
_currentSampleIndex = sampleIndex;
spectrumCache = new SpectrumCache();
ticGenerator = new TicGenerator(_run, spectrumCache);
xicGenerator = new XicGenerator(_run, spectrumCache);
spectrumExtractor = new SpectrumExtractor(_run, spectrumCache);
averagedSpectrumExtractor = new AveragedSpectrumExtractor(_run, spectrumCache);
}
}