public static IEnumerable <IHashableFeature> GetInPropertySubSeqEnumeration(IHashableFeature regionFeature, bool fromLeft, IEnumerable <IHashableFeature> epitopeSubSeqEnumeration, Pair <NEC, Hla> entity, int littleLength)
{
foreach (IHashableFeature epitopeSubSeq in epitopeSubSeqEnumeration)
{
string aaSeqFull = (string)((Feature)epitopeSubSeq).Evaluate(entity);
foreach (string aaSeqLittle in SpecialFunctions.SubstringEnumeration(aaSeqFull, littleLength))
{
foreach (List <string> propertyCombination in KmerProperties.EveryPropertyCombination(aaSeqLittle))
{
string propertySeq = SpecialFunctions.Join(",", propertyCombination);
InProperty feature = InProperty.GetInstance(propertySeq, epitopeSubSeq);
Debug.Assert((bool)feature.Evaluate(entity)); // real assert - must only generate true features
yield return(feature);
}
}
}
}
public static IEnumerable <IHashableFeature> GetPropertySeqInRegionInstance(int k, Pair <NEC, Hla> necAndHla, IHashableFeature regionFeature)
{
NEC nec = necAndHla.First;
string region = (string)((Feature)regionFeature).Evaluate(necAndHla);
Set <string> aaSeqSet = Set <string> .GetInstance(SpecialFunctions.SubstringEnumeration(region, k));
foreach (string aaSeq in aaSeqSet)
{
foreach (List <string> propertyCombination in KmerProperties.EveryPropertyCombination(aaSeq))
{
string propertySeq = SpecialFunctions.Join(",", propertyCombination);
InProperty feature = InProperty.GetInstance(propertySeq, regionFeature);
Debug.Assert((bool)feature.Evaluate(necAndHla)); // real assert - must only generate true features
yield return(feature);
}
}
}