/// <summary> Reads the atom types from the data file.
///
/// </summary>
/// <param name="builder">The IChemObjectBuilder used to create new IAtomType's.
/// </param>
/// <returns> a Vector with atom types. Is empty if some reading error occured.
/// </returns>
public virtual System.Collections.ArrayList readAtomTypes(IChemObjectBuilder builder)
{
System.Collections.ArrayList isotopes = System.Collections.ArrayList.Synchronized(new System.Collections.ArrayList(10));
try
{
parser.setFeature("http://xml.org/sax/features/validation", false);
//logger.info("Deactivated validation");
}
//UPGRADE_TODO: Class 'org.xml.sax.SAXException' was converted to 'System.Xml.XmlException' which has a different behavior. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1073'"
catch (System.Xml.XmlException exception)
{
//logger.warn("Cannot deactivate validation: ", exception.Message);
//logger.debug(exception);
}
AtomTypeHandler handler = new AtomTypeHandler(builder);
parser.setContentHandler(handler);
try
{
parser.parse(new XmlSourceSupport(input));
isotopes = handler.AtomTypes;
}
catch (System.IO.IOException exception)
{
//UPGRADE_TODO: The equivalent in .NET for method 'java.lang.Throwable.getMessage' may return a different value. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1043'"
//logger.error("IOException: ", exception.Message);
//logger.debug(exception);
}
//UPGRADE_TODO: Class 'org.xml.sax.SAXException' was converted to 'System.Xml.XmlException' which has a different behavior. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1073'"
catch (System.Xml.XmlException saxe)
{
//logger.error("SAXException: ", saxe.Message);
//logger.debug(saxe);
}
return(isotopes);
}
/// <summary> Reads the atom types from the data file.
///
/// </summary>
/// <param name="builder">The IChemObjectBuilder used to create new IAtomType's.
/// </param>
/// <returns> a Vector with atom types. Is empty if some reading error occured.
/// </returns>
public virtual System.Collections.ArrayList readAtomTypes(IChemObjectBuilder builder)
{
System.Collections.ArrayList isotopes = System.Collections.ArrayList.Synchronized(new System.Collections.ArrayList(10));
try
{
parser.setFeature("http://xml.org/sax/features/validation", false);
//logger.info("Deactivated validation");
}
//UPGRADE_TODO: Class 'org.xml.sax.SAXException' was converted to 'System.Xml.XmlException' which has a different behavior. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1073'"
catch (System.Xml.XmlException exception)
{
//logger.warn("Cannot deactivate validation: ", exception.Message);
//logger.debug(exception);
}
AtomTypeHandler handler = new AtomTypeHandler(builder);
parser.setContentHandler(handler);
try
{
parser.parse(new XmlSourceSupport(input));
isotopes = handler.AtomTypes;
}
catch (System.IO.IOException exception)
{
//UPGRADE_TODO: The equivalent in .NET for method 'java.lang.Throwable.getMessage' may return a different value. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1043'"
//logger.error("IOException: ", exception.Message);
//logger.debug(exception);
}
//UPGRADE_TODO: Class 'org.xml.sax.SAXException' was converted to 'System.Xml.XmlException' which has a different behavior. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1073'"
catch (System.Xml.XmlException saxe)
{
//logger.error("SAXException: ", saxe.Message);
//logger.debug(saxe);
}
return isotopes;
}