private static void stats()
{
if (!sdpInteractive.finishedForward)
{
sdpInteractive.importBirthDecisionsFromFile();
// ask for forward iteration output file(s) - NFxxxx and Rxxxx
sdpInteractive.importPopulationFromFile();
sdpInteractive.importPopulationGrowth();
}
Console.WriteLine("-- calculating stats");
sdpInteractive.calcStats();
Console.WriteLine("-- calculated stats");
Console.WriteLine("-- writing stats to disk");
sdpInteractive.outputStats();
Console.WriteLine("-- stats written to disk");
}
/// <summary>
///
/// </summary>
/// <param name="args">Array of four mortality parameters (n, l, m, h)</param>
/// <param name="logToFile">If false, program only outputs to Console. If true, program outputs to file rather than Console</param>
private static void batchMode(string[] args)
{
// Get mortality parameters
MortalityParam mortMaternal, mortSiblingComp, mortSiblingHelp, mortChildInfluence, mortMotherInfluence;
StreamWriter sw = null;
// run backwards and forwards using passed mortality params (no user input required)
// population name
string population = args[0];
//
mortMaternal = parseArgs(args[1]);
mortSiblingComp = parseArgs(args[2]);
mortSiblingHelp = parseArgs(args[3]);
// Siler params
double silerA1 = double.Parse(args[4]);
double silerB1 = double.Parse(args[5]);
double silerA2 = double.Parse(args[6]);
double silerA3 = double.Parse(args[7]);
double silerB3 = double.Parse(args[8]);
string births = "";
string popMatrix = "";
string rFile = "";
if (args.Length == 10)
{
births = args[9];
}
else if (args.Length >= 11)
{
births = args[9];
popMatrix = args[10];
rFile = args[11];
}
// Return a string of mortality parameter values (e.g. medium, low, medium, high returns "MLMH")
string sp1 = Enum.GetName(typeof(MortalityParam), mortMaternal).Substring(0, 1);
string sp2 = Enum.GetName(typeof(MortalityParam), mortSiblingComp).Substring(0, 1);
string sp3 = Enum.GetName(typeof(MortalityParam), mortSiblingHelp).Substring(0, 1);
string p = population + "-" + sp1 + sp2 + sp3; // +sp4 + sp5;
// set up log file
string logFilename = "Log-" + p + ".log";
Console.WriteLine("(Running in batch mode)");
Console.WriteLine();
// create and initialise model
Console.WriteLine("-- initialising model");
BirthIntervals sdp = new BirthIntervals();
Console.WriteLine("-- model initialised");
// set parameters of model
sdp.population = population;
sdp.childbirthMortality = mortMaternal;
sdp.siblingCompetition = mortSiblingComp;
sdp.siblingHelp = mortSiblingHelp;
// set Siler params
sdp.silerA1 = silerA1;
sdp.silerB1 = silerB1;
sdp.silerA2 = silerA2;
sdp.silerA3 = silerA3;
sdp.silerB3 = silerB3;
Console.WriteLine(PrintParams(mortMaternal, mortSiblingComp, mortSiblingHelp));
if (args.Length < 10)
{
// calculate optimal birth intervals
Console.WriteLine("-- beginning backward iteration");
sdp.runBackward();
Console.WriteLine("-- backward iteration finished");
// output birth decisions and fitness here
Console.WriteLine("-- writing birth decisions to disk");
sdp.outputBirthDecisions();
sdp.outputGrowthRate();
Console.WriteLine("-- birth decisions written to disk");
Console.WriteLine("-- beginning forward iteration");
sdp.runForward();
Console.WriteLine("-- forward iteration finished");
Console.WriteLine("-- writing population data to disk");
sdp.outputGrowthRate();
Console.WriteLine("-- population data written to disk");
}
if (args.Length == 10)
{
Console.WriteLine("-- importing births from {0}", births);
sdp.importBirthDecisionsFromFile(births);
Console.WriteLine("-- birth decisions imported");
Console.WriteLine("-- beginning forward iteration");
sdp.runForward();
Console.WriteLine("-- forward iteration finished");
Console.WriteLine("-- writing population data to disk");
sdp.outputGrowthRate();
Console.WriteLine("-- population data written to disk");
}
else if (args.Length >= 11)
{
Console.WriteLine("-- importing births from {0}", births);
sdp.importBirthDecisionsFromFile(births);
Console.WriteLine("-- birth decisions imported");
Console.WriteLine("-- importing population matrix from {0}", popMatrix);
sdp.importPopulationFromFile(popMatrix);
Console.WriteLine("-- population matrix imported");
Console.WriteLine("-- importing population growth rate from {0}", rFile);
sdp.importPopulationGrowth(rFile);
Console.WriteLine("-- population growth rate imported");
Console.WriteLine("-- importing population matrix from {0}", popMatrix);
sdp.importPopulationFromFile(popMatrix);
Console.WriteLine("-- population matrix imported");
}
Console.WriteLine("-- calculating stats");
sdp.calcStats();
Console.WriteLine("-- calculated stats");
Console.WriteLine("-- writing stats data to disk");
sdp.outputStats();
Console.WriteLine("-- stats data written to disk");
}