public void AddGene(Gene gene, int indexInGenome)
{
gene.IndexInGenome = indexInGenome;
Elements.Add(gene);
}
/// <summary>
/// This loads the stream (represents the file, but not necessarily of type FileStream) into a Team
/// object and returns that object.
/// </summary>
/// <param name="stream"></param>
/// <returns></returns>
public static Team LoadFromFile(Stream stream)
{
Team retTeam = new Team();
var reader = new StreamReader(stream);
stream.Position = 0;
List<string> lines = new List<string>();
string allText = reader.ReadToEnd();
stream.Position = 0;
//string[] separators = new string[] { "\\r\\n" };
string[] allLines = Team.ParseAllText(allText);
var currentGenome = new Genome();
int elementIndex = 0;
for (int i = 0; i < allLines.Length; i++)
{
var line = reader.ReadLine();
var lineStart = line.Substring(0, 4);
if (lineStart == "geno")
{
if (line.Substring(0, 7) == "genomes")
{
//we have a beginning of a genome line
currentGenome = new Genome();
elementIndex = 0;
string idAsString = line.Substring(_LengthGenomeStartTag + 1, line.Length - _LengthGenomeStartTag - 1);
currentGenome.Id = int.Parse(idAsString);
}
else
{
//we have an endgenome tag, so add the genome to the team
retTeam.Genomes.Add(currentGenome);
currentGenome = null;
}
}
else if (lineStart == "trai")
{
//this line is a trait
elementIndex++;
var newTrait = new Trait();
newTrait.FullLineText = line;
currentGenome.AddTrait(newTrait, elementIndex);
}
else if (lineStart == "gene")
{
//this line is a gene element
elementIndex++;
var newElement = new Gene();
newElement.FullLineText = line;
currentGenome.AddGene(newElement, elementIndex);
}
else if (lineStart == "node")
{
//this line is a node element
elementIndex++;
var newElement = new Node();
newElement.FullLineText = line;
currentGenome.AddNode(newElement, elementIndex);
}
else
throw new Exception();
}
return retTeam;
}