Beispiel #1
0
        private void TETRAtoCSV_Click(object sender, RoutedEventArgs e)
        {
            SaveFileDialog saveFileDialog1 = new SaveFileDialog();

            saveFileDialog1.InitialDirectory = Project.folderFullPath;
            saveFileDialog1.FileName         = Project.projectName + "_TETRA";
            saveFileDialog1.Filter           = "table (.csv)|*.csv";
            saveFileDialog1.FilterIndex      = 2;
            if (saveFileDialog1.ShowDialog() == true)
            {
                if (TETRA.GenerateCSVTETRA(saveFileDialog1.FileName) == true)
                {
                    MainWindow.main.lblStatus.Content = "Table generated to: " + System.IO.Path.GetFileName(saveFileDialog1.FileName);
                }
                else
                {
                    MainWindow.main.lblStatus.Content = "Failed (No results?).";
                }
            }
        }
Beispiel #2
0
        private void btnCompute_Click(object sender, RoutedEventArgs e)
        {
            btnCancel.IsEnabled   = false;
            btnCompute.IsEnabled  = false;
            lbSelection.IsEnabled = false;
            Status = "Calculation in progress, please wait";
            foreach (var pair in uniqueFastaPairs)
            {
                if (pair.ANIB == true)
                {
                    anib.Add(new Project.ItemsSelectedToCompute()
                    {
                        FullPath  = pair.FullPath,
                        FullPathB = pair.FullPathB,
                        Title     = pair.Title
                    });
                }
                if (pair.TETRA == true)
                {
                    tetra.Add(new Project.ItemsSelectedToCompute()
                    {
                        FullPath  = pair.FullPath,
                        FullPathB = pair.FullPathB,
                        Title     = pair.Title
                    }

                              );
                }
            }
            int  tetrasToComp = tetra.Count;
            int  anibToComp   = anib.Count;
            int  errorsANI    = 0;
            bool successTETRA = false;

            if (tetrasToComp > 0)
            {
                successTETRA = TETRA.computeTetra(tetra);
                if (successTETRA == true)
                {
                    string inf = "Tetranucleotide calculation successful. No errors.";
                    MessageBox.Show(inf, "Success", MessageBoxButton.OK, MessageBoxImage.Information);
                    Status = inf;
                    MainWindow.main.Status = inf;
                    MainWindow.main.EnableMatrixC();
                }

                else
                {
                    string error = "Tetranucleotide calculation failed for one or more pairs.";
                    MessageBox.Show(error, "Error", MessageBoxButton.OK, MessageBoxImage.Warning);
                    lblStatusANIT.Content             = error;
                    MainWindow.main.lblStatus.Content = error;
                    Project.ErrorLog.Add(error);
                }
            }
            if (anibToComp > 0)
            {
                string dir = Project.folderFullPath + "\\temp\\ani";
                if (Directory.Exists(dir))
                {
                    Directory.Delete(dir, true);
                }
                Directory.CreateDirectory(dir);
                errorsANI = ANI.computeANIb(anib);

                if (errorsANI == 0)
                {
                    string inf = "ANIb calculation successful. No errors.";
                    MessageBox.Show(inf, "Success", MessageBoxButton.OK, MessageBoxImage.Information);
                    Status = inf;
                    MainWindow.main.Status = inf;
                    MainWindow.main.EnableMatrixC();
                }
                else if (errorsANI == 1)
                {
                    string inf = " All pairs have already been processed and their ANIb results are available.";
                    MessageBox.Show(inf, "Success", MessageBoxButton.OK, MessageBoxImage.Information);
                    Status = inf;
                    MainWindow.main.Status = inf;
                    MainWindow.main.EnableMatrixC();
                }
                else if (errorsANI == 2)
                {
                    string inf = "ANIb calculation finished with errors.Missing files and respective pairs have been removed from the project.For more informations check logs.";
                    MessageBox.Show(inf, "Warning", MessageBoxButton.OK, MessageBoxImage.Warning);
                    Status = inf;
                    MainWindow.main.Status = inf;
                    MainWindow.main.EnableMatrixC();
                }
                else if (errorsANI == 3)
                {
                    string error = "ANIb calculation failed for all selected pairs. Missing files and respective pairs have been removed from the project. For more informations check logs.";
                    MessageBox.Show(error, "Error", MessageBoxButton.OK, MessageBoxImage.Warning);
                    Status = error;
                    MainWindow.main.Status = error;
                    Project.ErrorLog.Add(error);
                }
            }

            this.Close();
        }