public object Visit(ASTRingIdentifier node, object data)
{
System.Console.Out.WriteLine(IndentString() + node);
++indent;
data = node.ChildrenAccept(this, data);
--indent;
return(data);
}
public object Visit(ASTRingIdentifier node, object data)
{
IQueryAtom atom = (IQueryAtom)data;
RingIdentifierAtom ringIdAtom = new RingIdentifierAtom(builder)
{
Atom = atom
};
IQueryBond bond;
if (node.JjtGetNumChildren() == 0)
{
// implicit bond
bond = null;
}
else
{
bond = (IQueryBond)node.JjtGetChild(0).JjtAccept(this, data);
}
ringIdAtom.RingBond = bond;
return(ringIdAtom);
}
private void HandleRingClosure(IQueryAtom atom, ASTRingIdentifier ringIdentifier)
{
RingIdentifierAtom ringIdAtom = (RingIdentifierAtom)ringIdentifier.JjtAccept(this, atom);
// if there is already a RingIdentifierAtom, create a bond between
// them and add the bond to the query
int ringId = ringIdentifier.RingId;
// ring digit > 9 - expand capacity
if (ringId >= ringAtoms.Length)
{
ringAtoms = Arrays.CopyOf(ringAtoms, 100);
}
// Ring Open
if (ringAtoms[ringId] == null)
{
ringAtoms[ringId] = ringIdAtom;
if (neighbors.ContainsKey(atom))
{
neighbors[atom].Add(ringIdAtom);
}
}
// Ring Close
else
{
IQueryBond ringBond;
// first check if the two bonds ma
if (ringAtoms[ringId].RingBond == null)
{
if (ringIdAtom.RingBond == null)
{
if (atom is AromaticSymbolAtom &&
ringAtoms[ringId].Atom is AromaticSymbolAtom)
{
ringBond = new AromaticQueryBond(builder);
}
else
{
ringBond = new RingBond(builder);
}
}
else
{
ringBond = ringIdAtom.RingBond;
}
}
else
{
// Here I assume the bond are always same. This should be checked by the parser already
ringBond = ringAtoms[ringId].RingBond;
}
((IBond)ringBond).SetAtoms(new[] { ringAtoms[ringId].Atom, atom });
query.Bonds.Add((IBond)ringBond);
// if the connected atoms was tracking neighbors, replace the
// placeholder reference
if (neighbors.ContainsKey(ringAtoms[ringId].Atom))
{
IList <IAtom> localNeighbors = neighbors[ringAtoms[ringId].Atom];
localNeighbors[localNeighbors.IndexOf(ringAtoms[ringId])] = atom;
}
if (neighbors.ContainsKey(atom))
{
neighbors[atom].Add(ringAtoms[ringId].Atom);
}
ringAtoms[ringId] = null;
}
}
public object Visit(ASTRingIdentifier node, object data)
{
// TODO Auto-generated method stub
return(null);
}
