/// <summary>Looks at a residue type and copies properties from the base type if one was specified.</summary>
/// <param name="residueType">The residue to examine and change</param>
private ResidueType FillDerived(ResidueType residueType)
{
ResidueType baseType = null;
if (residueType.derived_from != null)
{
baseType = ResidueType.Find(type => StringUtilities.StringsAreEqual(type.fom_type, residueType.derived_from));
if (baseType != null)
{
baseType = FillDerived(baseType); // Make sure the base residue type has itself been filled
}
}
if (baseType != null)
{
residueType = (ResidueType)ReflectionUtilities.Clone(residueType);
if (residueType.fraction_C == 0)
{
residueType.fraction_C = baseType.fraction_C;
}
if (residueType.po4ppm == 0)
{
residueType.po4ppm = baseType.po4ppm;
}
if (residueType.nh4ppm == 0)
{
residueType.nh4ppm = baseType.nh4ppm;
}
if (residueType.no3ppm == 0)
{
residueType.no3ppm = baseType.no3ppm;
}
if (residueType.specific_area == 0)
{
residueType.specific_area = baseType.specific_area;
}
if (residueType.pot_decomp_rate == 0)
{
residueType.pot_decomp_rate = baseType.pot_decomp_rate;
}
if (residueType.cf_contrib == 0)
{
residueType.cf_contrib = baseType.cf_contrib;
}
if (residueType.fr_c == null)
{
residueType.fr_c = (double[])baseType.fr_c.Clone();
}
if (residueType.fr_n == null)
{
residueType.fr_n = (double[])baseType.fr_n.Clone();
}
if (residueType.fr_p == null)
{
residueType.fr_p = (double[])baseType.fr_p.Clone();
}
}
return(residueType);
}
/// <summary>Gets a specific residue type. Throws if not found.</summary>
/// <param name="name">The name of the residue type to find</param>
public ResidueType GetResidueType(string name)
{
if (ResidueType != null)
{
ResidueType residueType = ResidueType.Find(type => StringUtilities.StringsAreEqual(type.fom_type, name));
if (residueType != null)
{
return(FillDerived(residueType));
}
}
throw new Exception($"Could not find residue type '{name}'");
}
