/// <summary>Does the Nitrogen uptake.</summary>
/// <param name="zonesFromSoilArbitrator">List of zones from soil arbitrator</param>
public void DoNitrogenUptake(List <ZoneWaterAndN> zonesFromSoilArbitrator)
{
foreach (ZoneWaterAndN thisZone in zonesFromSoilArbitrator)
{
ZoneState zone = Zones.Find(z => z.Name == thisZone.Zone.Name);
if (zone != null)
{
zone.solutes.Subtract("NO3", SoluteManager.SoluteSetterType.Plant, thisZone.NO3N);
zone.solutes.Subtract("NH4", SoluteManager.SoluteSetterType.Plant, thisZone.NH4N);
zone.NitUptake = MathUtilities.Multiply_Value(MathUtilities.Add(thisZone.NO3N, thisZone.NH4N), -1);
}
}
}
private new void OnSimulationCommencing(object sender, EventArgs e)
{
Soil soil = Apsim.Find(this, typeof(Soil)) as Soil;
if (soil == null)
{
throw new Exception("Cannot find soil");
}
if (soil.Crop(Plant.Name) == null && soil.Weirdo == null)
{
throw new Exception("Cannot find a soil crop parameterisation for " + Plant.Name);
}
PlantZone = new ZoneState(Plant, this, soil, 0, InitialDM.Value(), Plant.Population, MaximumNConc.Value());
Zones = new List <ZoneState>();
base.OnSimulationCommencing(sender, e);
}
/// <summary>Does the Nitrogen uptake.</summary>
/// <param name="zonesFromSoilArbitrator">List of zones from soil arbitrator</param>
public void DoNitrogenUptake(List <ZoneWaterAndN> zonesFromSoilArbitrator)
{
foreach (ZoneWaterAndN thisZone in zonesFromSoilArbitrator)
{
ZoneState zone = Zones.Find(z => z.Name == thisZone.Zone.Name);
if (zone != null)
{
// Send the delta water back to SoilN that we're going to uptake.
NitrogenChangedType NitrogenUptake = new NitrogenChangedType();
NitrogenUptake.DeltaNO3 = MathUtilities.Multiply_Value(thisZone.NO3N, -1.0);
NitrogenUptake.DeltaNH4 = MathUtilities.Multiply_Value(thisZone.NH4N, -1.0);
zone.NitUptake = MathUtilities.Add(NitrogenUptake.DeltaNO3, NitrogenUptake.DeltaNH4);
zone.soil.SoilNitrogen.SetNitrogenChanged(NitrogenUptake);
}
}
}
/// <summary>Gets the nitrogen supply from the specified zone.</summary>
/// <param name="zone">The zone.</param>
/// <param name="NO3Supply">The returned NO3 supply</param>
/// <param name="NH4Supply">The returned NH4 supply</param>
public void CalculateNitrogenSupply(ZoneWaterAndN zone, ref double[] NO3Supply, ref double[] NH4Supply)
{
ZoneState myZone = Zones.Find(z => z.Name == zone.Zone.Name);
if (myZone != null)
{
if (RWC == null || RWC.Length != myZone.soil.Thickness.Length)
{
RWC = new double[myZone.soil.Thickness.Length];
}
double NO3Uptake = 0;
double NH4Uptake = 0;
double[] thickness = myZone.soil.Thickness;
double[] water = myZone.soil.Water;
double[] ll15mm = myZone.soil.LL15mm;
double[] dulmm = myZone.soil.DULmm;
double[] bd = myZone.soil.BD;
double accuDepth = 0;
for (int layer = 0; layer < thickness.Length; layer++)
{
accuDepth += thickness[layer];
if (myZone.LayerLive[layer].Wt > 0)
{
double factorRootDepth = Math.Max(0, Math.Min(1, 1 - (accuDepth - Depth) / thickness[layer]));
RWC[layer] = (water[layer] - ll15mm[layer]) / (dulmm[layer] - ll15mm[layer]);
RWC[layer] = Math.Max(0.0, Math.Min(RWC[layer], 1.0));
double SWAF = nUptakeSWFactor.Value(layer);
double kno3 = this.kno3.Value(layer);
double NO3ppm = zone.NO3N[layer] * (100.0 / (bd[layer] * thickness[layer]));
NO3Supply[layer] = Math.Min(zone.NO3N[layer] * kno3 * NO3ppm * SWAF * factorRootDepth, (maxDailyNUptake.Value() - NO3Uptake));
NO3Uptake += NO3Supply[layer];
double knh4 = this.knh4.Value(layer);
double NH4ppm = zone.NH4N[layer] * (100.0 / (bd[layer] * thickness[layer]));
NH4Supply[layer] = Math.Min(zone.NH4N[layer] * knh4 * NH4ppm * SWAF * factorRootDepth, (maxDailyNUptake.Value() - NH4Uptake));
NH4Uptake += NH4Supply[layer];
}
}
}
}
private void OnSimulationCommencing(object sender, EventArgs e)
{
Soil soil = Apsim.Find(this, typeof(Soil)) as Soil;
if (soil == null)
{
throw new Exception("Cannot find soil");
}
if (soil.Crop(Plant.Name) == null && soil.Weirdo == null)
{
throw new Exception("Cannot find a soil crop parameterisation for " + Plant.Name);
}
PlantZone = new ZoneState(Plant, this, soil, 0, initialDM.Value(), Plant.Population, maximumNConc.Value(),
rootFrontVelocity, maximumRootDepth, remobilisationCost);
Zones = new List <ZoneState>();
Allocated = new PMF.Biomass();
Senesced = new Biomass();
Detached = new Biomass();
Removed = new Biomass();
}
/// <summary>Gets or sets the water supply.</summary>
/// <param name="zone">The zone.</param>
public double[] CalculateWaterSupply(ZoneWaterAndN zone)
{
ZoneState myZone = Zones.Find(z => z.Name == zone.Zone.Name);
if (myZone == null)
{
return(null);
}
SoilCrop crop = myZone.soil.Crop(Plant.Name) as SoilCrop;
double[] supply = new double[myZone.soil.Thickness.Length];
double[] layerMidPoints = Soil.ToMidPoints(myZone.soil.Thickness);
for (int layer = 0; layer < myZone.soil.Thickness.Length; layer++)
{
if (layer <= Soil.LayerIndexOfDepth(myZone.Depth, myZone.soil.Thickness))
{
supply[layer] = Math.Max(0.0, crop.KL[layer] * KLModifier.ValueForX(layerMidPoints[layer]) *
(zone.Water[layer] - crop.LL[layer] * myZone.soil.Thickness[layer]) * Soil.ProportionThroughLayer(layer, myZone.Depth, myZone.soil.Thickness));
}
}
return(supply);
}