public void OutputCurrentModelState(ModelGrid currentModelGrid, FunctionalGroupDefinitions functionalGroupHandler, List<uint[]> cellIndices, uint currentTimestep, int maximumNumberOfCohorts, string filename)
{
float[] Latitude = currentModelGrid.Lats;
float[] Longitude = currentModelGrid.Lons;
float[] CohortFunctionalGroup = new float[functionalGroupHandler.GetNumberOfFunctionalGroups()];
for (int fg = 0; fg < CohortFunctionalGroup.Length; fg++)
{
CohortFunctionalGroup[fg] = fg;
}
int CellCohortNumber = 0;
GridCellCohortHandler CellCohorts;
for (int cellIndex = 0; cellIndex < cellIndices.Count; cellIndex++)
{
CellCohorts = currentModelGrid.GetGridCellCohorts(cellIndices[cellIndex][0], cellIndices[cellIndex][1]);
for (int i = 0; i < CellCohorts.Count; i++)
{
if (CellCohorts[i].Count > CellCohortNumber) CellCohortNumber = CellCohorts[i].Count;
}
}
int MaxNumberCohorts = Math.Max(CellCohortNumber, maximumNumberOfCohorts);
float[] Cohort = new float[MaxNumberCohorts];
for (int c = 0; c < Cohort.Length; c++)
{
Cohort[c] = c;
}
//Define an array for stock functional group - there are only three currently
float[] StockFunctionalGroup = new float[] { 1, 2, 3 };
//Define an array for index of stocks - there is only one currently
float[] Stock = new float[] { 1 };
string Filename = filename + "_" + currentTimestep.ToString() + Simulation.ToString();
StateOutput = SDSCreator.CreateSDS("netCDF", Filename, _OutputPath);
//Define the cohort properties for output
string[] CohortProperties = new string[]
{"JuvenileMass", "AdultMass", "IndividualBodyMass", "CohortAbundance",
"BirthTimeStep", "MaturityTimeStep", "LogOptimalPreyBodySizeRatio",
"MaximumAchievedBodyMass","Merged","TrophicIndex","ProportionTimeActive"};
//define the dimensions for cohort outputs
string[] dims = new string[] { "Latitude", "Longitude", "Cohort Functional Group", "Cohort" };
// Add the variables for each cohort property
// Then calculate the state for this property and put the data to this variable
foreach (string v in CohortProperties)
{
DataConverter.AddVariable(StateOutput, "Cohort" + v, 4,
dims, currentModelGrid.GlobalMissingValue, Latitude,
Longitude, CohortFunctionalGroup, Cohort);
StateOutput.PutData<double[, , ,]>("Cohort" + v,
CalculateCurrentCohortState(currentModelGrid, v, Latitude.Length, Longitude.Length, CohortFunctionalGroup.Length, Cohort.Length, cellIndices));
StateOutput.Commit();
}
//Define the stock properties for output
string[] StockProperties = new string[] { "IndividualBodyMass", "TotalBiomass" };
//define the dimensions for cohort outputs
dims = new string[] { "Latitude", "Longitude", "Stock Functional Group", "Stock" };
// Add the variables for each stock property
// Then calculate the state for this property and put the data to this variable
foreach (string v in StockProperties)
{
DataConverter.AddVariable(StateOutput, "Stock" + v, 4,
dims, currentModelGrid.GlobalMissingValue, Latitude,
Longitude, StockFunctionalGroup, Stock);
StateOutput.PutData<double[, , ,]>("Stock" + v,
CalculateCurrentStockState(currentModelGrid, v, Latitude.Length, Longitude.Length, StockFunctionalGroup.Length, Stock.Length, cellIndices));
StateOutput.Commit();
}
//Close this data set
StateOutput.Dispose();
}
