private void AddPeptideReference(Library library, XmlReader xmlReader)
{
string proteinRef = xmlReader.GetAttribute("ref");
if (!proteinRef.StartsWith("DECOY"))
{
Library.Protein correspondingProtein = (Library.Protein)(library.ProteinList[proteinRef]);
correspondingProtein.AssociatedPeptideIds.Add(lastPeptideRead);
}
else
{
Library.Protein correspondingProtein = (Library.Protein)(library.ProteinDecoyList[proteinRef]);
correspondingProtein.AssociatedPeptideIds.Add(lastPeptideRead);
}
}
private void AddProtein(Library library, XmlReader xmlReader)
{
var protein = new Library.Protein();
protein.Id = xmlReader.GetAttribute("id");
protein.AssociatedPeptideIds = new List <string>();
if (protein.Id.StartsWith("DECOY"))
{
library.ProteinDecoyList.Add(protein.Id, protein);
}
else
{
library.ProteinList.Add(protein.Id, protein);
StoreUniprotIds(library, protein.Id);
}
}
