/// <summary>
/// Initializes the extension with a data file.
/// </summary>
public override void Initialize()
{
reinitialized = false;
//initialize metadata
MetadataHandler.InitializeMetadata(parameters.Timestep,
parameters.StatusMapNames,
parameters.MortMapNames,
parameters.LogFileName,
parameters.ManyAgentParameters,
ModelCore);
//get input params map names
Timestep = parameters.Timestep;
statusMapName = parameters.StatusMapNames;
mortMapNames = parameters.MortMapNames;
//initialize site variables:
int numAgents = parameters.ManyAgentParameters.Count();
SiteVars.Initialize(modelCore, numAgents);
//Dispersal probdisp = new Dispersal();
manyAgentParameters = parameters.ManyAgentParameters;
int agentIndex = 0;
//Initialize non-library climate data
loadedClimateData = ClimateData.ReadClimateData(manyAgentParameters);
foreach (IAgent activeAgent in manyAgentParameters)
{
if (activeAgent == null)
{
ModelCore.UI.WriteLine("Agent Parameters NOT loading correctly.");
}
//read initial infection map and initialize cell status for each agent
EpidemicRegions.ReadMap(activeAgent.InitEpiMap, agentIndex);
agentIndex++;
//initialize and populate dictionary with dispersal probabilities for current agent
//probdisp.Initialize(activeAgent);
Dispersal.Initialize(activeAgent);
//Initialize climate data to calculate historic average for normalization
ClimateVariableDefinition.CalculateHistoricClimateVariables(activeAgent);
}
}
public new void InitializePhase2()
{
SiteVars.InitializeTimeOfLastDisturbances();
reinitialized = true;
}