public MassSpectrum GetMassSpectrum(MassSpectrum metaSpectrum, SpectrumList spectrumList)
{
MassSpectrum spectrum = new MassSpectrum(metaSpectrum, spectrumList.spectrum(metaSpectrum.Index, true));
//MassSpectrum realMetaSpectrum = ( metaSpectrum.Tag as DataGridViewRow ).Tag as MassSpectrum;
//realMetaSpectrum.Element.dataProcessing = spectrum.Element.dataProcessing;
//realMetaSpectrum.Element.defaultArrayLength = spectrum.Element.defaultArrayLength;
return(spectrum);
}
public MassSpectrum(MassSpectrum metaSpectrum, pwiz.CLI.msdata.Spectrum spectrum)
{
source = metaSpectrum.source;
spectrumList = metaSpectrum.spectrumList;
index = metaSpectrum.index;
Tag = metaSpectrum.Tag;
AnnotationSettings = metaSpectrum.AnnotationSettings;
//element = spectrum;
id = metaSpectrum.id;
}
public SpectrumViewer(string filename, object index, string interpretation)
{
// Prepare the annotation
annotation = new PeptideFragmentationAnnotation(interpretation, 1, 2, false, true, false, false, true, false, false, true, false, true);
annotation.OptionsPanel.Dock = DockStyle.None;
annotation.OptionsPanel.Dock = DockStyle.Fill;
// Get the mass spectrum
spectrum = SpectrumCache.GetMassSpectrum(filename, index);
if (spectrum == null)
{
return;
}
// Add annotation to the mass spectrum and get a new graph control
spectrum.AnnotationList.Clear();
spectrum.AnnotationList.Add((IAnnotation)annotation);
graph = new MSGraphControl();
graph.AddGraphItem(graph.GraphPane, spectrum);
graph.Dock = DockStyle.Fill;
// Create new panels and add the graph and annotations
spectrumPanel = new Panel();
spectrumPanel.Controls.Add(graph);
spectrumPanel.Dock = DockStyle.None;
spectrumPanel.Dock = DockStyle.Fill;
annotationPanel = new Panel();
annotationPanel.Controls.Add(annotation.OptionsPanel);
annotationPanel.Dock = DockStyle.None;
annotationPanel.Dock = DockStyle.Fill;
fragmentationPanel = new Panel();
annotation.FragmentInfoGridView.Location = new Point(0, 0);
annotation.FragmentInfoGridView.ScrollBars = ScrollBars.Both;
annotation.FragmentInfoGridView.Dock = DockStyle.None;
annotation.FragmentInfoGridView.Dock = DockStyle.Fill;
annotation.FragmentInfoGridView.BorderStyle = BorderStyle.FixedSingle;
fragmentationPanel.Controls.Add(annotation.FragmentInfoGridView);
fragmentationPanel.Dock = DockStyle.None;
fragmentationPanel.Dock = DockStyle.Fill;
// Add the call back for refreshing
annotation.OptionsChanged += new EventHandler(OnOptionsChanged);
}
