private static PersonItem GetProvider(Hl7.Fhir.Model.Immunization fhirImmunization)
{
var practitionerComponent = fhirImmunization.Practitioner.First(); //Let's take only the first one
if (practitionerComponent.Actor.IsContainedReference)
{
var containedReference = fhirImmunization.Contained.SingleOrDefault(resouce =>
resouce.Id.Equals(practitionerComponent.Actor.Reference) && resouce.GetType().Equals(typeof(Practitioner)));
if (containedReference == null)
{
return(null);
}
return((containedReference as Practitioner).ToHealthVault());
}
if (string.IsNullOrEmpty(practitionerComponent.Actor.Display))
{
return(null);
}
return(new PersonItem()
{
Name = new Name(practitionerComponent.Actor.Display)
});
}
public static ItemTypes.Immunization ToHealthVault(this Hl7.Fhir.Model.Immunization fhirImmunization)
{
ItemTypes.Immunization hvImmunization = fhirImmunization.ToThingBase <ItemTypes.Immunization>();
hvImmunization.Name = fhirImmunization.VaccineCode.ToCodableValue();
if (!fhirImmunization.DateElement.IsNullOrEmpty())
{
hvImmunization.DateAdministrated = fhirImmunization.DateElement.ToAproximateDateTime();
}
if (!fhirImmunization.Practitioner.IsNullOrEmpty())
{
hvImmunization.Administrator = GetProvider(fhirImmunization);
}
if (!fhirImmunization.Manufacturer.IsNullOrEmpty())
{
hvImmunization.Manufacturer = GetManufacturer(fhirImmunization);
}
hvImmunization.Lot = fhirImmunization.LotNumber;
hvImmunization.Route = fhirImmunization.Route.ToCodableValue();
if (fhirImmunization.ExpirationDateElement != null)
{
hvImmunization.ExpirationDate = fhirImmunization.ExpirationDateElement.ToAproximateDateTime().ApproximateDate;
}
hvImmunization.AnatomicSurface = fhirImmunization.Site.ToCodableValue();
Extension immunizationExtension = fhirImmunization.GetExtension(HealthVaultExtensions.ImmunizationDetail);
if (immunizationExtension != null)
{
hvImmunization.Sequence = immunizationExtension.GetStringExtension(HealthVaultExtensions.ImmunizationDetailSequence);
hvImmunization.Consent = immunizationExtension.GetStringExtension(HealthVaultExtensions.ImmunizationDetailConcent);
hvImmunization.AdverseEvent = immunizationExtension.GetStringExtension(HealthVaultExtensions.ImmunizationDetailAdverseEvent);
}
if (!fhirImmunization.Note.IsNullOrEmpty())
{
fhirImmunization.Note.ForEach(note =>
{
string separator = string.Empty;
if (!string.IsNullOrEmpty(hvImmunization.CommonData.Note))
{
separator = Environment.NewLine; //Let's separate each note with new line
}
hvImmunization.CommonData.Note += $"{separator}{note.Text}";
});
}
return(hvImmunization);
}
private static CodableValue GetManufacturer(Hl7.Fhir.Model.Immunization fhirImmunization)
{
var manufacturerComponent = fhirImmunization.Manufacturer;
if (manufacturerComponent.IsContainedReference)
{
var containedReference = fhirImmunization.Contained.SingleOrDefault(resouce =>
resouce.Id.Equals(manufacturerComponent.Reference) && resouce.GetType().Equals(typeof(Hl7.Fhir.Model.Organization)));
if (containedReference == null)
{
return(null);
}
return(new CodableValue((containedReference as Hl7.Fhir.Model.Organization).Name));
}
if (string.IsNullOrEmpty(manufacturerComponent.Display))
{
return(null);
}
return(new CodableValue(manufacturerComponent.Display));
}
/// <summary>
/// Parse Immunization
/// </summary>
public static Hl7.Fhir.Model.Immunization ParseImmunization(IFhirReader reader, ErrorList errors, Hl7.Fhir.Model.Immunization existingInstance = null)
{
Hl7.Fhir.Model.Immunization result = existingInstance != null ? existingInstance : new Hl7.Fhir.Model.Immunization();
string currentElementName = reader.CurrentElementName;
reader.EnterElement();
while (reader.HasMoreElements())
{
var atName = reader.CurrentElementName;
// Parse element extension
if (atName == "extension")
{
result.Extension = new List <Hl7.Fhir.Model.Extension>();
reader.EnterArray();
while (ParserUtils.IsAtArrayElement(reader, "extension"))
{
result.Extension.Add(ExtensionParser.ParseExtension(reader, errors));
}
reader.LeaveArray();
}
// Parse element language
else if (atName == "language")
{
result.LanguageElement = CodeParser.ParseCode(reader, errors);
}
// Parse element text
else if (atName == "text")
{
result.Text = NarrativeParser.ParseNarrative(reader, errors);
}
// Parse element contained
else if (atName == "contained")
{
result.Contained = new List <Hl7.Fhir.Model.Resource>();
reader.EnterArray();
while (ParserUtils.IsAtArrayElement(reader, "contained"))
{
result.Contained.Add(ParserUtils.ParseContainedResource(reader, errors));
}
reader.LeaveArray();
}
// Parse element _id
else if (atName == "_id")
{
result.LocalIdElement = Id.Parse(reader.ReadPrimitiveContents(typeof(Id)));
}
// Parse element date
else if (atName == "date")
{
result.DateElement = FhirDateTimeParser.ParseFhirDateTime(reader, errors);
}
// Parse element vaccineType
else if (atName == "vaccineType")
{
result.VaccineType = CodeableConceptParser.ParseCodeableConcept(reader, errors);
}
// Parse element subject
else if (atName == "subject")
{
result.Subject = ResourceReferenceParser.ParseResourceReference(reader, errors);
}
// Parse element refusedIndicator
else if (atName == "refusedIndicator")
{
result.RefusedIndicatorElement = FhirBooleanParser.ParseFhirBoolean(reader, errors);
}
// Parse element reported
else if (atName == "reported")
{
result.ReportedElement = FhirBooleanParser.ParseFhirBoolean(reader, errors);
}
// Parse element performer
else if (atName == "performer")
{
result.Performer = ResourceReferenceParser.ParseResourceReference(reader, errors);
}
// Parse element requester
else if (atName == "requester")
{
result.Requester = ResourceReferenceParser.ParseResourceReference(reader, errors);
}
// Parse element manufacturer
else if (atName == "manufacturer")
{
result.Manufacturer = ResourceReferenceParser.ParseResourceReference(reader, errors);
}
// Parse element location
else if (atName == "location")
{
result.Location = ResourceReferenceParser.ParseResourceReference(reader, errors);
}
// Parse element lotNumber
else if (atName == "lotNumber")
{
result.LotNumberElement = FhirStringParser.ParseFhirString(reader, errors);
}
// Parse element expirationDate
else if (atName == "expirationDate")
{
result.ExpirationDateElement = DateParser.ParseDate(reader, errors);
}
// Parse element site
else if (atName == "site")
{
result.Site = CodeableConceptParser.ParseCodeableConcept(reader, errors);
}
// Parse element route
else if (atName == "route")
{
result.Route = CodeableConceptParser.ParseCodeableConcept(reader, errors);
}
// Parse element doseQuantity
else if (atName == "doseQuantity")
{
result.DoseQuantity = QuantityParser.ParseQuantity(reader, errors);
}
// Parse element explanation
else if (atName == "explanation")
{
result.Explanation = ImmunizationParser.ParseImmunizationExplanationComponent(reader, errors);
}
// Parse element reaction
else if (atName == "reaction")
{
result.Reaction = new List <Hl7.Fhir.Model.Immunization.ImmunizationReactionComponent>();
reader.EnterArray();
while (ParserUtils.IsAtArrayElement(reader, "reaction"))
{
result.Reaction.Add(ImmunizationParser.ParseImmunizationReactionComponent(reader, errors));
}
reader.LeaveArray();
}
// Parse element vaccinationProtocol
else if (atName == "vaccinationProtocol")
{
result.VaccinationProtocol = ImmunizationParser.ParseImmunizationVaccinationProtocolComponent(reader, errors);
}
else
{
errors.Add(String.Format("Encountered unknown element {0} while parsing {1}", reader.CurrentElementName, currentElementName), reader);
reader.SkipSubElementsFor(currentElementName);
result = null;
}
}
reader.LeaveElement();
return(result);
}
public void WhenImmunizationTransformedToFhir_ThenValuesAreEqual()
{
var now = new LocalDateTime(2017, 9, 21, 18, 55, 10, 100);
var afterOneMonth = new LocalDate(2017, 10, 20);
var immunization = new ItemTypes.Immunization
{
Name = new CodableValue("cholera vaccine", new CodedValue {
Value = "26",
Family = "HL7",
VocabularyName = "vaccines-cvx",
Version = "2.3 09_2008"
}),
DateAdministrated = new ApproximateDateTime(now),
Administrator = new PersonItem
{
Name = new Name
{
Full = "Justin Case"
}
},
Manufacturer = new CodableValue("Baxter Healthcare Corporation", new CodedValue
{
Value = "BA",
Family = "HL7",
VocabularyName = "vaccine-manufacturers-mvx",
Version = "2.3 07_2008"
}),
Lot = "AAJN11K",
Route = new CodableValue("By mouth", new CodedValue
{
Value = "po",
Family = "wc",
VocabularyName = "medication-routes",
Version = "2"
}),
ExpirationDate = new ApproximateDate(afterOneMonth),
Sequence = "Last",
AnatomicSurface = new CodableValue("Metacarpophalangeal joint structure of index finger", new CodedValue {
Value = "289002",
VocabularyName = "SnomedBodyLocation",
Family = "Snomed",
Version = "Jan2008"
}),
AdverseEvent = "Something bad happened",
Consent = "A concent from parent goes here"
};
immunization.CommonData.Note = "Some note goes here";
Hl7.Fhir.Model.Immunization fhirImmunization = immunization.ToFhir();
Assert.IsNotNull(fhirImmunization);
Assert.AreEqual(immunization.Name.Text, fhirImmunization.VaccineCode.Text);
Assert.AreEqual(now.ToDateTimeUnspecified(), fhirImmunization.DateElement.ToDateTimeOffset());
var containedPractitioner = fhirImmunization.Contained.Where(resource => resource.GetType().Equals(typeof(Practitioner))).SingleOrDefault() as Practitioner;
Assert.IsNotNull(containedPractitioner);
Assert.AreEqual(immunization.Administrator.Name.Full, containedPractitioner.Name.Single().Text);
var containedOrganization = fhirImmunization.Contained.Where(resource => resource.GetType().Equals(typeof(FhirOrganization))).SingleOrDefault() as FhirOrganization;
Assert.IsNotNull(containedOrganization);
Assert.AreEqual(immunization.Manufacturer.Text, containedOrganization.Name);
Assert.AreEqual(immunization.Lot, fhirImmunization.LotNumber);
Assert.AreEqual(immunization.Route.Text, fhirImmunization.Route.Text);
Assert.AreEqual(afterOneMonth.ToDateTimeUnspecified().ToUniversalTime(), fhirImmunization.ExpirationDateElement.ToPartialDateTime().Value.ToUniversalTime());
Assert.AreEqual(immunization.AnatomicSurface.Text, fhirImmunization.Site.Text);
var immunizationExtension = fhirImmunization.GetExtension(HealthVaultExtensions.ImmunizationDetail);
Assert.AreEqual(immunization.AdverseEvent, immunizationExtension.GetStringExtension(HealthVaultExtensions.ImmunizationDetailAdverseEvent));
Assert.AreEqual(immunization.Consent, immunizationExtension.GetStringExtension(HealthVaultExtensions.ImmunizationDetailConcent));
Assert.AreEqual(immunization.Sequence, immunizationExtension.GetStringExtension(HealthVaultExtensions.ImmunizationDetailSequence));
Assert.IsFalse(fhirImmunization.Note.IsNullOrEmpty());
Assert.AreEqual(immunization.CommonData.Note, fhirImmunization.Note.First().Text);
}
public static void SerializeImmunization(Hl7.Fhir.Model.Immunization value, IFhirWriter writer, bool summary)
{
writer.WriteStartRootObject("Immunization");
writer.WriteStartComplexContent();
// Serialize element _id
if (value.LocalIdElement != null)
{
writer.WritePrimitiveContents("_id", value.LocalIdElement, XmlSerializationHint.Attribute);
}
// Serialize element extension
if (value.Extension != null && !summary && value.Extension.Count > 0)
{
writer.WriteStartArrayElement("extension");
foreach (var item in value.Extension)
{
writer.WriteStartArrayMember("extension");
ExtensionSerializer.SerializeExtension(item, writer, summary);
writer.WriteEndArrayMember();
}
writer.WriteEndArrayElement();
}
// Serialize element language
if (value.LanguageElement != null && !summary)
{
writer.WriteStartElement("language");
CodeSerializer.SerializeCode(value.LanguageElement, writer, summary);
writer.WriteEndElement();
}
// Serialize element text
if (value.Text != null && !summary)
{
writer.WriteStartElement("text");
NarrativeSerializer.SerializeNarrative(value.Text, writer, summary);
writer.WriteEndElement();
}
// Serialize element contained
if (value.Contained != null && !summary && value.Contained.Count > 0)
{
writer.WriteStartArrayElement("contained");
foreach (var item in value.Contained)
{
writer.WriteStartArrayMember("contained");
FhirSerializer.SerializeResource(item, writer, summary);
writer.WriteEndArrayMember();
}
writer.WriteEndArrayElement();
}
// Serialize element date
if (value.DateElement != null && !summary)
{
writer.WriteStartElement("date");
FhirDateTimeSerializer.SerializeFhirDateTime(value.DateElement, writer, summary);
writer.WriteEndElement();
}
// Serialize element vaccineType
if (value.VaccineType != null && !summary)
{
writer.WriteStartElement("vaccineType");
CodeableConceptSerializer.SerializeCodeableConcept(value.VaccineType, writer, summary);
writer.WriteEndElement();
}
// Serialize element subject
if (value.Subject != null && !summary)
{
writer.WriteStartElement("subject");
ResourceReferenceSerializer.SerializeResourceReference(value.Subject, writer, summary);
writer.WriteEndElement();
}
// Serialize element refusedIndicator
if (value.RefusedIndicatorElement != null && !summary)
{
writer.WriteStartElement("refusedIndicator");
FhirBooleanSerializer.SerializeFhirBoolean(value.RefusedIndicatorElement, writer, summary);
writer.WriteEndElement();
}
// Serialize element reported
if (value.ReportedElement != null && !summary)
{
writer.WriteStartElement("reported");
FhirBooleanSerializer.SerializeFhirBoolean(value.ReportedElement, writer, summary);
writer.WriteEndElement();
}
// Serialize element performer
if (value.Performer != null && !summary)
{
writer.WriteStartElement("performer");
ResourceReferenceSerializer.SerializeResourceReference(value.Performer, writer, summary);
writer.WriteEndElement();
}
// Serialize element requester
if (value.Requester != null && !summary)
{
writer.WriteStartElement("requester");
ResourceReferenceSerializer.SerializeResourceReference(value.Requester, writer, summary);
writer.WriteEndElement();
}
// Serialize element manufacturer
if (value.Manufacturer != null && !summary)
{
writer.WriteStartElement("manufacturer");
ResourceReferenceSerializer.SerializeResourceReference(value.Manufacturer, writer, summary);
writer.WriteEndElement();
}
// Serialize element location
if (value.Location != null && !summary)
{
writer.WriteStartElement("location");
ResourceReferenceSerializer.SerializeResourceReference(value.Location, writer, summary);
writer.WriteEndElement();
}
// Serialize element lotNumber
if (value.LotNumberElement != null && !summary)
{
writer.WriteStartElement("lotNumber");
FhirStringSerializer.SerializeFhirString(value.LotNumberElement, writer, summary);
writer.WriteEndElement();
}
// Serialize element expirationDate
if (value.ExpirationDateElement != null && !summary)
{
writer.WriteStartElement("expirationDate");
DateSerializer.SerializeDate(value.ExpirationDateElement, writer, summary);
writer.WriteEndElement();
}
// Serialize element site
if (value.Site != null && !summary)
{
writer.WriteStartElement("site");
CodeableConceptSerializer.SerializeCodeableConcept(value.Site, writer, summary);
writer.WriteEndElement();
}
// Serialize element route
if (value.Route != null && !summary)
{
writer.WriteStartElement("route");
CodeableConceptSerializer.SerializeCodeableConcept(value.Route, writer, summary);
writer.WriteEndElement();
}
// Serialize element doseQuantity
if (value.DoseQuantity != null && !summary)
{
writer.WriteStartElement("doseQuantity");
QuantitySerializer.SerializeQuantity(value.DoseQuantity, writer, summary);
writer.WriteEndElement();
}
// Serialize element explanation
if (value.Explanation != null && !summary)
{
writer.WriteStartElement("explanation");
ImmunizationSerializer.SerializeImmunizationExplanationComponent(value.Explanation, writer, summary);
writer.WriteEndElement();
}
// Serialize element reaction
if (value.Reaction != null && !summary && value.Reaction.Count > 0)
{
writer.WriteStartArrayElement("reaction");
foreach (var item in value.Reaction)
{
writer.WriteStartArrayMember("reaction");
ImmunizationSerializer.SerializeImmunizationReactionComponent(item, writer, summary);
writer.WriteEndArrayMember();
}
writer.WriteEndArrayElement();
}
// Serialize element vaccinationProtocol
if (value.VaccinationProtocol != null && !summary)
{
writer.WriteStartElement("vaccinationProtocol");
ImmunizationSerializer.SerializeImmunizationVaccinationProtocolComponent(value.VaccinationProtocol, writer, summary);
writer.WriteEndElement();
}
writer.WriteEndComplexContent();
writer.WriteEndRootObject();
}
internal static Hl7.Fhir.Model.Immunization ToFhirInternal(ItemTypes.Immunization hvImmunization, Hl7.Fhir.Model.Immunization fhirImmunization)
{
fhirImmunization.VaccineCode = hvImmunization.Name.ToFhir();
fhirImmunization.DateElement = hvImmunization.DateAdministrated.ToFhir();
if (hvImmunization.Administrator != null)
{
fhirImmunization.Practitioner.Add(new Hl7.Fhir.Model.Immunization.PractitionerComponent
{
Actor = AddContainedResource(fhirImmunization, hvImmunization.Administrator.ToFhir())
});
}
if (hvImmunization.Manufacturer != null)
{
fhirImmunization.Manufacturer = AddContainedResource(fhirImmunization, new Hl7.Fhir.Model.Organization
{
Name = hvImmunization.Manufacturer.Text
});
}
fhirImmunization.LotNumber = hvImmunization.Lot;
fhirImmunization.Route = hvImmunization.Route.ToFhir();
fhirImmunization.ExpirationDateElement = hvImmunization.ExpirationDate.ToFhir();
if (!string.IsNullOrEmpty(hvImmunization.Sequence) ||
!string.IsNullOrEmpty(hvImmunization.AdverseEvent) ||
!string.IsNullOrEmpty(hvImmunization.Consent))
{
var immunizationExtension = new Extension
{
Url = HealthVaultExtensions.ImmunizationDetail
};
if (!string.IsNullOrEmpty(hvImmunization.Sequence))
{
immunizationExtension.AddExtension(HealthVaultExtensions.ImmunizationDetailSequence, new FhirString(hvImmunization.Sequence));
}
if (!string.IsNullOrEmpty(hvImmunization.Consent))
{
immunizationExtension.AddExtension(HealthVaultExtensions.ImmunizationDetailConcent, new FhirString(hvImmunization.Consent));
}
if (!string.IsNullOrEmpty(hvImmunization.AdverseEvent))
{
immunizationExtension.AddExtension(HealthVaultExtensions.ImmunizationDetailAdverseEvent, new FhirString(hvImmunization.AdverseEvent));
}
fhirImmunization.Extension.Add(immunizationExtension);
}
fhirImmunization.Site = hvImmunization.AnatomicSurface.ToFhir();
fhirImmunization.Note.Add(new Hl7.Fhir.Model.Annotation {
Text = hvImmunization.CommonData.Note
});
//Setting default values that is not available in HealthVault. Let's revisit when a good
//approach is found for better fidelity between Fhir & HV
fhirImmunization.Status = Hl7.Fhir.Model.Immunization.ImmunizationStatusCodes.Completed;
fhirImmunization.NotGiven = false;
fhirImmunization.PrimarySource = true;
return(fhirImmunization);
}
