public void GetIsolateById_ExistingIsolate_AllFieldsAreSet()
{
var service = new PubMlstService(GetUrlReturningIsolate, PostUrlReturns404);
var isolate = service.GetIsolateById(1234);
isolate.PubMlstId.Should().Be(1234);
isolate.PorAVr1.Should().Be("5");
isolate.PorAVr2.Should().Be("2");
isolate.FetAVr.Should().Be("F3-6");
isolate.PorB.Should().Be("2-2");
isolate.Fhbp.Should().Be("1511");
isolate.Nhba.Should().Be("20");
isolate.NadA.Should().Be("");
isolate.PenA.Should().Be("1");
isolate.GyrA.Should().Be("4");
isolate.ParC.Should().Be("1");
isolate.ParE.Should().Be("1");
isolate.RpoB.Should().Be("4");
isolate.RplF.Should().Be("1");
isolate.SequenceType.Should().Be("23");
isolate.ClonalComplex.Should().Be("ST-23 complex");
isolate.BexseroReactivity.Should().Be("none");
isolate.TrumenbaReactivity.Should().Be("cross-reactive");
}
public void GetIsolateByReference_SchemesPropertyNull_OtherValuesAreSet()
{
var controller = new PubMlstService(GetUrlReturningIsolateWithoutSchemes, PostUrlReturnsResult);
var isolate = controller.GetIsolateByReference("DE14505");
isolate.PubMlstId.Should().Be(93683);
isolate.PorAVr1.Should().Be("5");
isolate.PorAVr2.Should().Be("2");
isolate.FetAVr.Should().Be("F3-6");
isolate.PorB.Should().Be("2-2");
isolate.Fhbp.Should().Be("1511");
isolate.Nhba.Should().Be("20");
isolate.NadA.Should().Be("");
isolate.PenA.Should().Be("1");
isolate.GyrA.Should().Be("4");
isolate.ParC.Should().Be("1");
isolate.ParE.Should().Be("1");
isolate.RpoB.Should().Be("4");
isolate.RplF.Should().Be("1");
isolate.PorAVr1.Should().Be("5");
isolate.PorAVr2.Should().Be("2");
isolate.SequenceType.Should().BeNull();
isolate.ClonalComplex.Should().BeNull();
isolate.BexseroReactivity.Should().BeNull();
isolate.TrumenbaReactivity.Should().BeNull();
}
public void GetIsolateByReference_InexistingIsolate_ReturnsNull()
{
var controller = new PubMlstService(GetUrlReturns404, PostUrlReturns404);
var isolate = controller.GetIsolateByReference("DE14");
isolate.Should().BeNull();
}
public void GetIsolateByReference_InexistingIsolateWithoutMock_ReturnsNull()
{
var controller = new PubMlstService();
var isolate = controller.GetIsolateByReference("DE14");
isolate.Should().BeNull();
}
public void NeisseriaIsolates_InexisingIsolate_ReturnsEmptyResult()
{
var service = new PubMlstService(GetUrlReturns404, PostUrlReturns404);
var isolate = service.GetIsolateById(0);
isolate.Should().BeNull();
}
public void GetIsolateByReference_ExistingIsolateWithoutMock_FieldsAreSet()
{
var controller = new PubMlstService();
var isolate = controller.GetIsolateByReference("DE14692");
isolate.PorAVr1.Should().Be("7-1");
isolate.PorAVr2.Should().Be("1");
isolate.SequenceType.Should().BeNull();
isolate.ClonalComplex.Should().BeNull();
}
public void GetIsolateById_ExistingIsolateWithoutMock_FieldsAreSet()
{
var controller = new PubMlstService();
var isolate = controller.GetIsolateById(93683);
isolate.PorAVr1.Should().Be("5-1");
isolate.PorAVr2.Should().Be("10-1");
isolate.SequenceType.Should().Be("11");
isolate.ClonalComplex.Should().Be("ST-11 complex");
}
public void GetIsolateByReference_ExistingIsolate_FieldsAreSet()
{
var controller = new PubMlstService(GetUrlReturningIsolate, PostUrlReturnsResult);
var isolate = controller.GetIsolateByReference("DE14505");
isolate.PubMlstId.Should().Be(93683);
isolate.PorAVr1.Should().Be("5");
isolate.PorAVr2.Should().Be("2");
isolate.SequenceType.Should().Be("23");
isolate.ClonalComplex.Should().Be("ST-23 complex");
}
public void GetIsolateByReference_FieldsPropertyNull_OtherValuesAreSet()
{
var controller = new PubMlstService(GetUrlReturningIsolateWithoutFields, PostUrlReturnsResult);
var isolate = controller.GetIsolateByReference("DE14505");
isolate.PubMlstId.Should().Be(93683);
isolate.PorAVr1.Should().Be("5");
isolate.PorAVr2.Should().Be("2");
isolate.SequenceType.Should().BeNull();
isolate.ClonalComplex.Should().BeNull();
isolate.BexseroReactivity.Should().BeNull();
isolate.TrumenbaReactivity.Should().BeNull();
}
public void Setup()
{
_database = new ApplicationDbContextMock();
MockData.CreateMockData(_database);
for (int i = 0; i < 5; i++)
{
var isolate = MockData.CreateInstance <MeningoIsolate>();
var sending = MockData.CreateInstance <MeningoSending>();
sending.SamplingDate = i == 3 ? null : (DateTime?)_firstDayMorning.AddDays(i).AddHours(8);
sending.ReceivingDate = _firstDayMorning.AddDays(i).AddHours(8);
isolate.Sending = sending;
isolate.StemNumber = i == 4 ? null : (int?)i + 1;
isolate.NeisseriaPubMlstIsolate = null;
_database.MeningoIsolates.Add(isolate);
}
_pubMlstService = Substitute.For <PubMlstService>();
}
public PubMlstMatcher(IApplicationDbContext db, PubMlstService pubMlstService)
{
_db = db;
_pubMlstService = pubMlstService;
}
