protected void TestDoWorkBetween(BetweenGroupTest bt)
{
Dictionary <int, List <RSplitUnit <double> > > units = DataToProcess.GetGroupedList();
int cnt = units.Count;
List <List <double> > rankData = new List <List <double> > ();
foreach (KeyValuePair <int, List <RSplitUnit <double> > > kvp in units)
{
List <double> x = new List <double> ();
List <double> y = new List <double> ();
ExtractXYLists(kvp.Value, x, y);
rankData.Add(y);
}
List <List <TestResult> > results = new List <List <TestResult> > ();
for (int i = 0; i < cnt - 1; i++)
{
List <TestResult> tsr = new List <TestResult> ();
for (int j = i + 1; j < cnt; j++)
{
tsr.Add(StatsTester.RunBetweenTest(rankData [i], rankData [j], bt));
}
results.Add(tsr);
}
Gtk.Application.Invoke(delegate {
AssignResultsToTable(results, cnt, bt);
});
}
public static void Assemble()
{
Genome = new Genome();
ProgramState.Init();
AppSettings.Assemble();
RankSplit.Assemble();
FPKMFileNames = new List <string> ();
BAMFileNames = new List <string> ();
VariantFileNames = new List <string> ();
TypeDict = new ElementTypeDictionary();
Samples = new Dictionary <string, BioSample> ();
BioSample.ResetStaticLoader();
GeneToScaffDict = new Dictionary <string, string> ();
RegionToScaffDict = new Dictionary <string, string> ();
RSPToMergeSeries = new List <Series> ();
StatsTester.Assemble();
}
protected void TestDoWorkPaired(PairedTest pt)
{
List <double> x = new List <double> ();
List <double> y = new List <double> ();
ExtractXYLists(DataToProcess.GetRankedList(), x, y);
TestResult ts = StatsTester.RunPairedTest(x, y, pt);
Gtk.Application.Invoke(delegate {
covStatLabel.Text = ts.Statistic.ToString("G7");
covLProbLabel.Text = ts.LeftProbability.ToString("e2");
covRProbLabel.Text = ts.RightProbability.ToString("e2");
if (ts.Statistic > 0)
{
covRProbLabel.Text += " *";
}
else
{
covLProbLabel.Text += " *";
}
});
}