/// <summary>
/// Creates a fqFile_component_details class from the core information that is best still stored within the programs memory.
/// These classes populate a dictionary within the fqfilemap class where the component filename is their key.
/// </summary>
/// <param name="component">The component who's details are to be stored</param>
public void BuildFqFileMap(IFqFile component)
{
FqFile_Component_Details componentDetails = new FqFile_Component_Details();
componentDetails.ContructComponentDetails(component);
fqFileMap.GetFqFileComponentDetailsMap()[component.getFileName()] = componentDetails;
}
public void ContructComponentDetails(IFqFile component)
{
this.ComponentName = component.getFileName();
this.FileName = component.getFileName();
this.sequencerType = component.getSequencerType();
this.ComponentNumber = component.getComponentNumber();
this.TotalNucs = component.getTotalNucleotides();
this.TotalSequences = component.getFastqArraySize();
this.NucleotidesCleaned = component.getNucleotidesCleaned();
this.Distribution = component.getDistribution();
this.SequenceLengthDistribution = component.getSequenceLengthDistribution();
this.NCount = component.getNCount();
this.CCount = component.getCCount();
this.GCount = component.getGCount();
this.MaxSeqSize = component.getMaxSeqSize();
this.MinSeqSize = component.getMinSeqSize();
this.NPercent = component.nContents();
this.CPercent = component.cContents();
this.GPercent = component.gContents();
this.SequencesRemoved = component.getSequencesRemoved();
this.RemovedAdapters = component.getRemovedAdapters();
this.perBaseStatistics = component.GetPerBaseStatisticsArray();
}
/// <summary>
/// Creates a fqFile_component_details class from the core information that is best still stored within the programs memory.
/// These classes populate a dictionary within the fqfilemap class where the component filename is their key.
/// </summary>
/// <param name="component">The component who's details are to be stored</param>
public void BuildFqFileMap(IFqFile component)
{
FqFile_Component_Details componentDetails = new FqFile_Component_Details();
componentDetails.ContructComponentDetails(component);
fqFileMap.GetFqFileComponentDetailsMap()[component.getFileName()] = componentDetails;
}
public void ContructComponentDetails(IFqFile component)
{
this.ComponentName = component.getFileName();
this.FileName = component.getFileName();
this.sequencerType = component.getSequencerType();
this.ComponentNumber = component.getComponentNumber();
this.TotalNucs = component.getTotalNucleotides();
this.TotalSequences = component.getFastqArraySize();
this.NucleotidesCleaned = component.getNucleotidesCleaned();
this.Distribution = component.getDistribution();
this.SequenceLengthDistribution = component.getSequenceLengthDistribution();
this.NCount = component.getNCount();
this.CCount = component.getCCount();
this.GCount = component.getGCount();
this.MaxSeqSize = component.getMaxSeqSize();
this.MinSeqSize = component.getMinSeqSize();
this.NPercent = component.nContents();
this.CPercent = component.cContents();
this.GPercent = component.gContents();
this.SequencesRemoved = component.getSequencesRemoved();
this.RemovedAdapters = component.getRemovedAdapters();
this.perBaseStatistics = component.GetPerBaseStatisticsArray();
}
