private void StartBulkSearch()
{
// special string signifying a test
bool isTest = comparisonData.Comparison == "\tes\t";
string testId = isTest ? comparisonData.FB1 : string.Empty;
if (!isTest)
{
Log.Info(strUserId, comparisonData.ToString(), "Comparison Start", strHp_Head + " / " + strHd_Head);
}
// frequencies cache
DataTable dtFrequencies = new Database().GetFrequencyData();
// create denominator cache
Dictionary <string, Dictionary <string, double> > perRaceLocusDenominatorCache = new Dictionary <string, Dictionary <string, double> >();
foreach (DataRow drEth in new Database().getAllEthnics().Rows)
{
perRaceLocusDenominatorCache.Add(drEth["EthnicName"].ToString(), new Dictionary <string, double>());
}
foreach (string key in perRaceLocusDenominatorCache.Keys)
{
foreach (DataRow drLoc in bi.GetLocusInOrder(comparisonData.LabKitID).Rows)
{
perRaceLocusDenominatorCache[key].Add(drLoc["LocusName"].ToString().ToUpper(), double.NaN);
}
}
// end create denominator cache
// dropout cache
Dictionary <int, Dictionary <string, Dictionary <string, float> > > perReplicateDropOutCache = new Dictionary <int, Dictionary <string, Dictionary <string, float> > >();
for (int i = 0; i < 3; i++)
{
foreach (DataRow drLoc in bi.GetLocusInOrder(comparisonData.LabKitID).Rows)
{
if (!perReplicateDropOutCache.ContainsKey(i))
{
perReplicateDropOutCache.Add(i, new Dictionary <string, Dictionary <string, float> >());
}
perReplicateDropOutCache[i].Add(drLoc["LocusName"].ToString().ToUpper(), new Dictionary <string, float>());
}
}
// end dropout cache
// start frequency cache
Dictionary <string, Dictionary <string, Dictionary <string, float> > > perRaceLocusFrequencyCache = new Dictionary <string, Dictionary <string, Dictionary <string, float> > >();
foreach (DataRow drEth in new Database().getAllEthnics().Rows)
{
perRaceLocusFrequencyCache.Add(drEth["EthnicName"].ToString(), new Dictionary <string, Dictionary <string, float> >());
}
foreach (string key in perRaceLocusDenominatorCache.Keys)
{
foreach (DataRow drLoc in bi.GetLocusInOrder(comparisonData.LabKitID).Rows)
{
perRaceLocusFrequencyCache[key].Add(drLoc["LocusName"].ToString().ToUpper(), new Dictionary <string, float>());
}
}
// end frequency cache
// start bulk permutation caches
// all we need to do is send these in as not null
Dictionary <string, Dictionary <int, List <Comparison.AllelesPair> > > numeratorPermutationCache = new Dictionary <string, Dictionary <int, List <Comparison.AllelesPair> > >();
Dictionary <string, Dictionary <int, List <Comparison.AllelesPair> > > denominatorPermutationCache = new Dictionary <string, Dictionary <int, List <Comparison.AllelesPair> > >();
// end bulk permutation cache
Dictionary <string, Dictionary <string, float> > Results = new Dictionary <string, Dictionary <string, float> >();
// gets "lab types," "population," or "from file" comparison list from the database
DataTable dtKnownProfile = bi.GetKnown_Profile(strLab_Popultn_Type, comparisonData.FromFileGuid);
for (int i = 0; i < dtKnownProfile.Rows.Count; i++)
{
try
{
// reads datarow to a dictionary
comparisonData.ComparisonAlleles = ReadBulkComparison(dtKnownProfile, i);
FST.Common.Comparison comparison = new Comparison(comparisonData);
Dictionary <string, float> Result = comparison.DoCompare( // caches
dtFrequencies,
perRaceLocusDenominatorCache,
perRaceLocusFrequencyCache,
perReplicateDropOutCache,
numeratorPermutationCache,
denominatorPermutationCache
);
// if we're testing, write test results. otherwise, add results to the Results dictionary (gets passed to the bulk printer below)
if (isTest)
{
bi.WriteTestResults(testId, dtKnownProfile.Rows[i]["ID"].ToString(), Result["Asian"].ToString(), Result["Black"].ToString(), Result["Caucasian"].ToString(), Result["Hispanic"].ToString());
}
else
{
Results.Add(dtKnownProfile.Rows[i]["ID"].ToString(), Result);
}
}
catch
{
continue;
}
}
if (!isTest)
{
strReportFilePath = FSTService.Instance.BulkPrinter.Print(Results, dtKnownProfile, comparisonData);
}
if (!isTest)
{
Log.Info(strUserId, comparisonData.ToString(), "Comparison End", strHp_Head + " / " + strHd_Head);
}
}
