/// <summary>
/// LoadProject
/// </summary>
/// <param name="info">the load project information.</param>
public void LoadProject(ProjectInfo info)
{
List<EcellObject> passList = new List<EcellObject>();
string message = "";
string projectID = "";
Project project = null;
try
{
// Check Current.
if (info == null)
throw new EcellException(MessageResources.ErrLoadPrj);
if (m_currentProject != null)
CloseProject();
// Create project.
projectID = info.Name;
message = "[" + projectID + "]";
// Confirm Locked file.
ConfirmLock(info);
project = new Project(info, m_env);
// Set current project.
m_currentProject = project;
m_env.PluginManager.ChangeStatus(ProjectStatus.Loading);
// Load DMs.
project.UnloadSimulator();
m_env.DMDescriptorKeeper.Load(project.GetDMDirs());
project.ReloadSimulator();
// Create EcellProject.
List<EcellData> ecellDataList = new List<EcellData>();
ecellDataList.Add(new EcellData(Constants.textComment, new EcellValue(project.Info.Comment), null));
passList.Add(EcellObject.CreateObject(projectID, "", Constants.xpathProject, "", ecellDataList));
// Prepare datas.
project.LoadModel();
foreach (EcellObject model in project.ModelList)
{
Trace.WriteLine(string.Format(MessageResources.InfoLoadModel, model.ModelID));
m_env.Console.WriteLine(string.Format(MessageResources.InfoLoadModel, model.ModelID));
m_env.Console.Flush();
passList.Add(model);
}
foreach (string storedModelID in project.SystemDic.Keys)
{
passList.AddRange(project.StepperDic[storedModelID]);
passList.AddRange(project.SystemDic[storedModelID]);
}
// Set current project.
m_currentProject = project;
// Load analysis directory.
LoadAnalysisDirectory(project);
// Load SimulationParameters.
LoadSimulationParameters(project);
m_env.PluginManager.ParameterSet(projectID, project.Info.SimulationParam);
m_editCount = 0;
ClearSteppingModel();
}
catch (Exception ex)
{
passList = null;
CloseProject();
throw new EcellException(string.Format(MessageResources.ErrLoadPrj, projectID)+ "\n" + ex.Message, ex);
}
finally
{
if (m_currentProject != null)
{
if (passList != null && passList.Count > 0)
{
this.m_env.PluginManager.DataAdd(passList);
}
foreach (string paramID in this.GetSimulationParameterIDs())
{
this.m_env.PluginManager.ParameterAdd(projectID, paramID);
}
m_env.ActionManager.AddAction(new LoadProjectAction(projectID, project.Info.Filename));
// Send Message.
m_env.Console.WriteLine(string.Format(MessageResources.InfoLoadPrj, projectID));
m_env.Console.Flush();
m_env.PluginManager.ChangeStatus(ProjectStatus.Loaded);
}
}
}
/// <summary>
/// Save Project
/// </summary>
private void SaveProject(ProjectInfo info)
{
try
{
m_env.DataManager.SaveProject();
CheckAndReplaceRecentProject(info);
}
catch (Util.CancelException)
{
return;
}
catch (EcellException e)
{
if(e.InnerException is UnauthorizedAccessException)
Util.ShowErrorDialog(string.Format(MessageResources.ErrUnauthorizedAccess, Util.GetBaseDir()));
else
Util.ShowErrorDialog(e.Message);
}
}
/// <summary>
/// Replace the recent project,
/// </summary>
/// <param name="info">the recent project.</param>
private void CheckAndReplaceRecentProject(ProjectInfo info)
{
if (info.Type == ProjectType.Template)
return;
KeyValuePair<string, string> oldProject = new KeyValuePair<string,string>();
foreach (KeyValuePair<string, string> project in m_recentProjects)
{
if (project.Key.Equals(info.Name))
oldProject = project;
}
if (oldProject.Key != null)
m_recentProjects.Remove(oldProject);
if (File.Exists(info.Filename))
m_recentProjects.Add(new KeyValuePair<string, string>(info.Name, info.Filename));
ResetRecentProjectMenu();
}
public void TearDown()
{
_unitUnderTest = null;
}
public void TestProjectInfoAccessors()
{
// Check Default Parameter.
try
{
ProjectInfo info = new ProjectInfo();
Assert.IsNotNull(info, "Constructor of type, ProjectInfo failed to create instance.");
Assert.AreEqual(Constants.defaultPrjID, info.Name, "Name is unexpected value.");
Assert.AreEqual(Constants.defaultComment, info.Comment, "Comment is unexpected value.");
Assert.AreEqual(Constants.defaultSimParam, info.SimulationParam, "SimulationParam is unexpected value.");
Assert.AreEqual(ProjectType.NewProject, info.Type, "ProjectType is unexpected value.");
Assert.IsNotNull(info.UpdateTime, "UpdateTime is unexpected value.");
Assert.IsNull(info.ProjectPath, "ProjectPath is unexpected value.");
Assert.IsNull(info.Filename, "ProjectFile is unexpected value.");
Assert.IsEmpty(info.DMDirList, "DMDirList is unexpected value.");
Assert.IsEmpty(info.Models, "Models is unexpected value.");
}
catch (Exception e)
{
Trace.WriteLine(e.StackTrace);
Assert.Fail("Error on Default Parameter.");
}
// Check Default Parameter.
try
{
ProjectInfo info = new ProjectInfo(Name, Comment, Time, SimParam);
Assert.IsNotNull(info, "Constructor of type, ProjectInfo failed to create instance.");
Assert.AreEqual(Name, info.Name, "Name is unexpected value.");
Assert.AreEqual(Comment, info.Comment, "Comment is unexpected value.");
Assert.AreEqual(SimParam, info.SimulationParam, "SimulationParam is unexpected value.");
Assert.AreEqual(Time, info.UpdateTime, "UpdateTime is unexpected value.");
Assert.AreEqual(ProjectType.NewProject, info.Type, "ProjectType is unexpected value.");
Assert.IsNull(info.ProjectPath, "ProjectPath is unexpected value.");
Assert.IsNull(info.Filename, "ProjectFile is unexpected value.");
Assert.IsEmpty(info.DMDirList, "DMDirList is unexpected value.");
Assert.IsEmpty(info.Models, "Models is unexpected value.");
}
catch (Exception e)
{
Trace.WriteLine(e.StackTrace);
Assert.Fail("Error on Default Parameter.");
}
// Check Accessor's Setter.
try
{
ProjectInfo info = new ProjectInfo();
Assert.IsNotNull(info, "Constructor of type, ProjectInfo failed to create instance.");
info.Name = Name;
info.Comment = Comment;
info.UpdateTime = Time;
info.SimulationParam = SimParam;
info.ProjectPath = "";
info.Filename = "";
info.DMDirList.Add("");
info.Models.Add("");
info.Comment = null;
info.UpdateTime = null;
info.ProjectPath = null;
info.Filename = null;
info.DMDirList.Clear();
info.Models.Clear();
Assert.AreEqual(Name, info.Name, "Name is unexpected value.");
Assert.AreEqual(null, info.Comment, "Comment is unexpected value.");
Assert.AreEqual(SimParam, info.SimulationParam, "SimulationParam is unexpected value.");
Assert.AreNotEqual(null, info.UpdateTime, "UpdateTime is unexpected value.");
Assert.AreEqual(ProjectType.NewProject, info.Type, "ProjectType is unexpected value.");
Assert.IsNull(info.ProjectPath, "ProjectPath is unexpected value.");
Assert.IsNull(info.Filename, "ProjectFile is unexpected value.");
Assert.IsEmpty(info.DMDirList, "DMDirList is unexpected value.");
Assert.IsEmpty(info.Models, "Models is unexpected value.");
}
catch (Exception e)
{
Trace.WriteLine(e.StackTrace);
Assert.Fail("Error on Default Parameter.");
}
}
/// <summary>
///
/// </summary>
/// <param name="info"></param>
/// <returns></returns>
public void ConfirmLock(ProjectInfo info)
{
if (info.Type != ProjectType.Project)
return;
string filename = info.Filename;
FileStream stream = null;
try
{
stream = File.Open(filename, FileMode.Open, FileAccess.ReadWrite);
}
catch (Exception e)
{
throw new EcellException(string.Format(MessageResources.ErrLockedFile, filename), e);
}
finally
{
if (stream != null)
stream.Close();
}
}
/// <summary>
/// Get Project from Info file.
/// </summary>
/// <param name="filepath">the project information file path.</param>
/// <param name="access">Access Mode.</param>
/// <returns>the project information object.</returns>
private static ProjectInfo LoadProjectFromInfo(string filepath, FileAccess access)
{
ProjectInfo project = null;
string line = "";
string comment = "";
string simParam = Constants.defaultSimParam;
string time = File.GetLastWriteTime(filepath).ToString();
string dirPathName = Path.GetDirectoryName(filepath);
string prjName = Path.GetFileName(dirPathName);
FileStream stream = new FileStream(filepath, FileMode.Open, access, FileShare.Read);
TextReader reader = new StreamReader(stream);
while ((line = reader.ReadLine()) != null)
{
if (line.IndexOf(Constants.textComment) == 0)
{
if (line.IndexOf(Constants.delimiterEqual) != -1)
{
comment = line.Split(Constants.delimiterEqual.ToCharArray())[1].Trim();
}
else
{
comment = line.Substring(line.IndexOf(Constants.textComment));
}
}
else if (line.IndexOf(Constants.textParameter) == 0)
{
simParam = line;
}
else if (!comment.Equals(""))
{
comment = comment + "\n" + line;
}
else if (line.IndexOf(Constants.xpathProject) == 0)
{
if (line.IndexOf(Constants.delimiterEqual) != -1)
{
prjName = line.Split(Constants.delimiterEqual.ToCharArray())[1].Trim();
}
else
{
prjName = line.Substring(line.IndexOf(Constants.textComment));
}
}
}
stream.Close();
reader.Close();
project = new ProjectInfo(prjName, comment, time, simParam);
project.Type = ProjectType.Project;
project.ProjectPath = dirPathName;
return project;
}
public void TestProjectInfoConstructors()
{
// Correct Check
try
{
ProjectInfo info;
info = new ProjectInfo();
//
info = new ProjectInfo(Name, Comment, Time, SimParam);
info = new ProjectInfo(Name, "", Time, SimParam);
info = new ProjectInfo(Name, null, Time, SimParam);
info = new ProjectInfo(Name, Comment, "", SimParam);
info = new ProjectInfo(Name, Comment, null, SimParam);
info = new ProjectInfo(Name, null, null, SimParam);
}
catch (Exception e)
{
Trace.WriteLine(e.StackTrace);
Assert.Fail("Error on Constructor.");
}
}
public void TestProjectInfoConstructorsErrorCase()
{
// Error Check
try
{
ProjectInfo info = new ProjectInfo("", Comment, Time, SimParam);
Assert.Fail("Incorrect null check.");
}
catch (Exception e)
{
Trace.WriteLine(e.StackTrace);
}
// Error Check
try
{
ProjectInfo info = new ProjectInfo(null, Comment, Time, SimParam);
Assert.Fail("Incorrect null check.");
}
catch (Exception e)
{
Trace.WriteLine(e.StackTrace);
}
// Error Check
try
{
ProjectInfo info = new ProjectInfo(Name, "", "", "");
Assert.Fail("Incorrect null check.");
}
catch (Exception e)
{
Trace.WriteLine(e.StackTrace);
}
// Error Check
try
{
ProjectInfo info = new ProjectInfo(Name, "", "", null);
Assert.Fail("Incorrect null check.");
}
catch (Exception e)
{
Trace.WriteLine(e.StackTrace);
}
}
/// <summary>
/// GetSaveDir
/// </summary>
/// <param name="info">project information object.</param>
/// <param name="filepath">the project information file path.</param>
/// <returns>the save directory.</returns>
private static string GetSaveDir( ProjectInfo info, string filepath)
{
// If filepath is empty, create new path.
if (string.IsNullOrEmpty(filepath))
return Path.Combine(Util.GetBaseDir(), info.Name);
// if filepath is directory. return directory path.
if (Directory.Exists(filepath))
return filepath;
string ext = Path.GetExtension(filepath);
if (ext.Equals(Constants.FileExtINFO) || ext.Equals(Constants.FileExtXML))
return Path.GetDirectoryName(filepath);
else if (ext.Equals(Constants.FileExtEML))
return Path.Combine(Util.GetBaseDir(), Path.GetFileNameWithoutExtension(filepath));
else
return filepath;
}
public void TestProjectInfoAccessorsErrorCase()
{
// Check Accessor error.
try
{
ProjectInfo info = new ProjectInfo();
info.Name = null;
Assert.Fail("Incorrect null check.");
}
catch (Exception e)
{
Trace.WriteLine(e.StackTrace);
}
try
{
ProjectInfo info = new ProjectInfo();
info.SimulationParam = null;
Assert.Fail("Incorrect null check.");
}
catch (Exception e)
{
Trace.WriteLine(e.StackTrace);
}
}
/// <summary>
/// SaveProjectXML
/// </summary>
/// <param name="project">the project information object.</param>
/// <param name="saveDir">the save directory.</param>
public static void SaveProjectXML(ProjectInfo project, string saveDir)
{
XmlTextWriter xmlOut = null;
string projectXML = Path.Combine(saveDir, Constants.fileProjectXML);
try
{
project.Type = ProjectType.Project;
// Create xml file
xmlOut = new XmlTextWriter(projectXML, Encoding.UTF8);
// Use indenting for readability
xmlOut.Formatting = Formatting.Indented;
xmlOut.WriteStartDocument();
// Always begin file with identification and warning
xmlOut.WriteComment(Constants.xPathFileHeader1);
xmlOut.WriteComment(Constants.xPathFileHeader2);
project.EditCount++;
// Save settings.
xmlOut.WriteStartElement(Constants.xPathEcellProject);
xmlOut.WriteElementString(Constants.xpathProject, project.Name);
xmlOut.WriteElementString(Constants.textDate, project.CreationTime);
xmlOut.WriteElementString(Constants.textCreator, project.Creator);
xmlOut.WriteElementString(Constants.textEditCount, project.EditCount.ToString());
xmlOut.WriteElementString(Constants.textComment, project.Comment);
xmlOut.WriteElementString(Constants.textParameter, project.SimulationParam);
xmlOut.WriteElementString(Constants.xpathType, ((Int32)project.Type).ToString());
xmlOut.WriteEndElement();
xmlOut.WriteEndDocument();
project.ProjectPath = saveDir;
project.UpdateTime = DateTime.Now.ToString();
project.Filename = projectXML;
}
finally
{
if (xmlOut != null)
{
xmlOut.Close();
}
}
}
/// <summary>
/// Save the project information.
/// </summary>
/// <param name="project">target project</param>
/// <param name="filepath">the project information file path.</param>
public static void Save(ProjectInfo project, string filepath)
{
try
{
// Get Saving Directory.
string saveDir = GetSaveDir(project, filepath);
if (!Directory.Exists(saveDir))
Directory.CreateDirectory(saveDir);
// Save XML setting file.
SaveProjectXML(project, saveDir);
}
catch (Exception ex)
{
throw new EcellException(ex.Message, ex);
}
}
/// <summary>
/// Get Project from XML file.
/// </summary>
/// <param name="filepath">the xml file path.</param>
/// <param name="access">Access Mode.</param>
/// <returns>the project information object.</returns>
private static ProjectInfo LoadProjectFromXML(string filepath, FileAccess access)
{
ProjectInfo project = null;
string dirPath = Path.GetDirectoryName(filepath);
string prjName = Path.GetFileName(dirPath);
string comment = "";
string createTime = "";
string param = Constants.defaultSimParam;
string creator = "";
int editCount = 0;
ProjectType type = ProjectType.Project;
try
{
// Load XML file
FileStream stream = new FileStream(filepath, FileMode.Open, access, FileShare.Read);
XmlDocument xmlD = new XmlDocument();
xmlD.Load(stream);
XmlNode settings = null;
foreach (XmlNode node in xmlD.ChildNodes)
{
if (node.Name.Equals(Constants.xPathEcellProject))
settings = node;
}
if (settings == null)
throw new EcellException("No Project Settings.");
// Load settings.
foreach (XmlNode setting in settings.ChildNodes)
{
switch (setting.Name)
{
// Project
case Constants.xpathProject:
prjName = setting.InnerText;
break;
// Date
case Constants.textDate:
createTime = setting.InnerText;
break;
// Comment
case Constants.textComment:
comment = setting.InnerText;
break;
// Creator
case Constants.textCreator:
creator = setting.InnerText;
break;
// EditCount
case Constants.textEditCount:
int.TryParse(setting.InnerText, out editCount);
break;
// SimulationParameter
//case Constants.textParameter:
// param = setting.InnerText;
// break;
case Constants.xpathType:
type = (ProjectType)Convert.ToInt32(setting.InnerText);
break;
}
}
// File close
stream.Close();
// Setup
project = new ProjectInfo(prjName, comment, createTime, param);
if (!(type == ProjectType.Project || type == ProjectType.Template || type == ProjectType.Revision))
type = ProjectType.Project;
project.Type = type;
project.ProjectPath = dirPath;
project.CreationTime = createTime;
project.Creator = creator;
project.EditCount = editCount;
project.UpdateTime = File.GetLastWriteTime(filepath).ToString();
// Set DM Path.
string dmPath = Path.Combine(dirPath, Constants.DMDirName);
if(Directory.Exists(dmPath))
project.DMDirList.Add(dmPath);
}
catch (Exception ex)
{
throw new EcellException("Failed to load Project XML", ex);
}
return project;
}
/// <summary>
/// LoadSBML
/// </summary>
/// <param name="filename">the SBML file name.</param>
public void LoadSBML(string filename)
{
WrappedSimulator sim = null;
try
{
CloseProject();
m_env.PluginManager.ChangeStatus(ProjectStatus.Loading);
// Load model
EcellModel model = SBML2EML.Convert(filename);
// Initialize
try
{
sim = new WrappedSimulator(Util.GetDMDirs());
EmlReader.InitializeModel(model, sim);
sim.Initialize();
}
catch (Exception e)
{
if (m_env.PluginManager.DockPanel != null)
Util.ShowWarningDialog(MessageResources.WarnInvalidData + "\n" + e.Message);
Trace.WriteLine(e.ToString());
}
// Create Project
string projectID = model.ModelID;
string comment = "Convert from SBML: " + Path.GetFileName(filename);
ProjectInfo info = new ProjectInfo(projectID, comment, DateTime.Now.ToString(), Constants.defaultSimParam);
info.Type = ProjectType.SBML;
Project project = new Project(info, m_env);
project.LoggerPolicyDic[Constants.defaultSimParam] = new LoggerPolicy();
m_currentProject = project;
project.Simulator = sim;
project.InitializeModel(model, sim);
// Load model
List<EcellObject> passList = new List<EcellObject>();
List<EcellData> ecellDataList = new List<EcellData>();
ecellDataList.Add(new EcellData(Constants.textComment, new EcellValue(comment), null));
passList.Add(EcellObject.CreateObject(projectID, "", Constants.xpathProject, "", ecellDataList));
passList.Add(model);
passList.AddRange(model.Children);
m_env.PluginManager.DataAdd(passList);
m_env.PluginManager.ParameterSet(projectID, Constants.defaultSimParam);
m_env.PluginManager.ChangeStatus(ProjectStatus.Loaded);
}
catch (Exception e)
{
CloseProject();
m_env.Console.WriteLine("Failed to convert SBML: " + filename);
m_env.Console.WriteLine(e.ToString());
throw new EcellException("Failed to convert SBML. " + filename, e);
}
}
public void TestProjectInfoSaverErrorCase()
{
try
{
ProjectInfo info = new ProjectInfo();
info.Save();
Assert.Fail("Incorrect null check.");
}
catch (Exception e)
{
Trace.WriteLine(e.StackTrace);
}
try
{
ProjectInfo info = new ProjectInfo();
info.Save();
Assert.Fail("Incorrect null check.");
}
catch (Exception e)
{
Trace.WriteLine(e.StackTrace);
}
}
/// <summary>
/// Creates the new "Project" object.
/// </summary>
/// <param name="projectID">The "Project" ID</param>
/// <param name="comment">The comment</param>
private void CreateProject(string projectID, string comment)
{
Project prj = null;
try
{
//
// Closes the current project.
//
if (m_currentProject != null)
{
this.CloseProject();
}
//
// Initialize
//
ProjectInfo info = new ProjectInfo(projectID, comment, DateTime.Now.ToString(), Constants.defaultSimParam);
prj = new Project(info, m_env);
m_currentProject = prj;
//
// 4 PluginManager
//
List<EcellData> ecellDataList = new List<EcellData>();
ecellDataList.Add(new EcellData(Constants.textComment, new EcellValue(comment), null));
EcellObject ecellObject
= EcellObject.CreateObject(projectID, "", Constants.xpathProject, "", ecellDataList);
List<EcellObject> ecellObjectList = new List<EcellObject>();
ecellObjectList.Add(ecellObject);
m_env.PluginManager.DataAdd(ecellObjectList);
m_env.ActionManager.AddAction(new NewProjectAction(projectID, comment));
m_env.PluginManager.ChangeStatus(ProjectStatus.Loaded);
m_env.Console.WriteLine(string.Format(MessageResources.InfoCrePrj, projectID));
m_env.Console.Flush();
Trace.WriteLine(string.Format(MessageResources.InfoCrePrj, projectID));
}
catch (Exception ex)
{
if (m_currentProject != null)
m_currentProject.Close();
m_currentProject = null;
string message = string.Format(
MessageResources.ErrCrePrj,
projectID);
Trace.WriteLine(message);
throw new EcellException(message, ex);
}
}
public void SetUp()
{
_unitUnderTest = new ProjectInfo();
}
/// <summary>
/// Creates the new "Project" instance with ProjectInfo.
/// </summary>
/// <param name="info">the project information object.</param>
/// <param name="env">ApplicationEnvironment</param>
public Project(ProjectInfo info, ApplicationEnvironment env)
{
if (info == null)
throw new EcellException(string.Format(MessageResources.ErrInvalidParam, "ProjectInfo"));
if (env == null)
throw new EcellException(string.Format(MessageResources.ErrInvalidParam, "ApplicationEnvironment"));
m_info = info;
m_env = env;
m_stepperDic = new Dictionary<string, List<EcellObject>>();
m_modelList = new List<EcellModel>();
m_systemDic = new Dictionary<string, List<EcellObject>>();
m_logableEntityPathDic = new Dictionary<string, string>();
m_loggerPolicyDic = new Dictionary<string, LoggerPolicy>();
// Loads the model.
if (info.Type != ProjectType.Model)
info.FindModels();
SetDMList();
m_simulator = CreateSimulatorInstance();
//
Lock();
}
/// <summary>
/// Get Project from Eml file.
/// </summary>
/// <param name="filepath">the eml file path.</param>
/// <returns>the project information object.</returns>
private static ProjectInfo LoadProjectFromEml(string filepath)
{
ProjectInfo project = null;
string name = Path.GetFileNameWithoutExtension(filepath);
string comment = "";
string time = File.GetLastWriteTime(filepath).ToString();
project = new ProjectInfo(name, comment, time, Constants.defaultSimParam);
project.Models.Add(filepath);
project.Type = ProjectType.Model;
return project;
}